DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment cana and kif5c

DIOPT Version :9

Sequence 1:NP_001027247.1 Gene:cana / 3771934 FlyBaseID:FBgn0040233 Length:1931 Species:Drosophila melanogaster
Sequence 2:XP_002935337.3 Gene:kif5c / 100493873 XenbaseID:XB-GENE-977474 Length:959 Species:Xenopus tropicalis


Alignment Length:1275 Identity:278/1275 - (21%)
Similarity:488/1275 - (38%) Gaps:415/1275 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 SIQVCIKVRPCEPGLTSLWQVKEGRSIQLADSH--------------AEPYVFDYVFDEGASNQE 58
            ||:|..:.||....           .||..|..              ::|||||.||....:.:.
 Frog     8 SIKVMCRFRPLNKA-----------EIQRGDKFIPVFKGEDTVVVGPSKPYVFDKVFPSNTTQEH 61

  Fly    59 VFDRMAKHIVHACMQGSNGTIFAYGQTSSGKTYTMMG---DEQNPGVMVLAAKEIFQQISSETER 120
            |:...||.||...:.|.|||||||||||||||:||.|   |.|..|::...|.:||..|.|..|.
 Frog    62 VYSACAKQIVKDVLDGYNGTIFAYGQTSSGKTHTMEGKLHDHQMMGIIPRIAHDIFDHIYSMDEN 126

  Fly   121 -DFLLRVGYIEIYNEKIYDLLNKKNQDLKIHESGNGIVNV-NCKESIVTSEDDLLRQLYMGNKER 183
             :|.::|.|.|||.:||.|||:....:|.:||..|.:..| .|.|..|:|.::::..:..|...|
 Frog   127 LEFHIKVSYFEIYLDKIRDLLDVSKTNLAVHEDKNRVPFVKGCTERFVSSPEEVMDVIDEGKANR 191

  Fly   184 VVGETNMNERSSRSHAIFRIIIESRKSDHSDNDTVKQSVLSLVDLAGSEQVDPA-------DHA- 240
            .|..|||||.|||||:||.|.|   |.::.:.:......|.||||||||:|...       |.| 
 Frog   192 HVAVTNMNEHSSRSHSIFLINI---KQENVETEKKLSGKLYLVDLAGSEKVSKTGAEGAVLDEAK 253

  Fly   241 ---SSLMIFRNLVKSLSESVDSKPNSFRDSKLPRIMLPSLGGNVLTSIICTITPSFVE--ESSST 300
               .||....|::.:|:|...:.. .:||||:.||:..|||||..|:||...:||...  |:.||
 Frog   254 NINKSLSALGNVISALAEGTKTHV-PYRDSKMTRILQDSLGGNCRTTIIICCSPSIFNEAETKST 317

  Fly   301 ISFGTCAKKIRCKPQVCKIDSETTMMRQLDRGISMLKDKLAKKKIKNES-QLVLQELEGRIKRDM 364
            :.||..||.|:           .|:...|:......|.|..|:|.|.:| :.::|.||..:.|  
 Frog   318 LMFGQRAKTIK-----------NTVSVNLELTAEEWKKKYEKEKDKTKSLKNIIQHLEMELNR-- 369

  Fly   365 LKIVSSASLDDYRLQKRRRTWTLTASGSEGDAPVLALPEPEESRLPRPSKLTNLPKPLFQRRGIA 429
                                |                                       ||   
 Frog   370 --------------------W---------------------------------------RR--- 372

  Fly   430 PKAKGICKTLKEKRLQTDNMDTMPGRAKQLGRETASRIPSVMMSKKYQESVPNCDAPQTEISALT 494
                                    |.|..:..:|         |.|.|:::..||......:.|.
 Frog   373 ------------------------GEAVPVDEQT---------SAKDQKTLEPCDNTPVIDNGLV 404

  Fly   495 ASNQVAKETIEKYEEQVKRLKETIERLEMENGKAVNLGEQFETHKAKSKQMEEELLSSISEKDST 559
            .:..::.|..:||:|.:..|...::..:.|..:...|.|     |.|.:.:::|.|.:.:.:|  
 Frog   405 GATNISSEEKKKYDEDIASLYGQLDDKDDEINQQSQLIE-----KLKQQMLDQEELLASTRRD-- 462

  Fly   560 IVSLQQSLEELSRDVLRN-SKEDQMRSMCPELESSCERICNKCLELERLLPLASASGLDSVACQF 623
               .::..|||:|..:.| :.:|:::.:...||                          .:|..:
 Frog   463 ---YEKIQEELTRLQIENDAAKDEVKEVLQALE--------------------------ELAVNY 498

  Fly   624 DQLRSEIAATRMKLESMLSTFSHASCEVSQKTTDCKRLSEQISTAHDDFGQLQEKYNNLKHKWSS 688
            || :|:....:.||...||.      |::||||:       ::....:..||||..|:.:.:.:.
 Frog   499 DQ-KSQEVEDKTKLNEQLSE------ELTQKTTN-------LTVTQRELSQLQELSNHQRKRTTE 549

  Fly   689 --QKLAIDTMQV-------DYNTIQQKYLQLQDEYRHLELRSDEQCQQLQDENSKLQAEIGTLKE 744
              ..|..|..::       |..|:.:....:::|:....|..           ||:::|:.:|..
 Frog   550 ILNLLLKDLGEIGGIVGTNDVKTLAEVNGVIEEEFTMARLYI-----------SKMKSEVKSLVN 603

  Fly   745 RVEEIHSELLEVPNPDTHPEDMELQNQELKKRLSKLQWEFDEIQLNYECLSNELMSTIQECDALR 809
            |.:::.|..:|.             |:::                      |.....:..|..|.
 Frog   604 RSKQLESAQIEA-------------NRKI----------------------NASEKELAACQLLS 633

  Fly   810 EEHKQRTTNSDLESMKSSGVGTECSDPENELDTDLLQQFTKLSKSIQQIELTDYSGGRRLFIYNH 874
            .:|:.:     ::|:                 ||.:|...:..:.:::.:........||    |
 Frog   634 SQHEAK-----IKSL-----------------TDYMQNMEQRRRQLEEAQDALNEELARL----H 672

  Fly   875 AEQDQSVPSLKLCLEPAKYLEGDGKQHDASDSVFLKGFLKCQRFQIVKINQEQNLVKEEDRMRDI 939
            |::.....|          .:...|:|          ..:.|..:.:|...||.:....:..:..
 Frog   673 AQEKMHKVS----------FQDKEKEH----------LTRLQDAEEIKKTLEQQMESHREAHQKQ 717

  Fly   940 IFQLKQEVDGKKNLIEEEKEVINNLRAQITSLNQIETIKNQNAKTKILCEELQTKDTVQTANKQE 1004
            :.:|:.|::.|:.:|::.|::...|:.|:..|    |...:..||    ||.|.::.:|      
 Frog   718 LSRLRDEIEEKQKMIDDLKDLNQKLQLQLDKL----TSDYEKLKT----EEEQREEDLQ------ 768

  Fly  1005 SQEVLTLKTSLAHLKSKVCELQKKLEKQSEDEKISELQSDIGEISECCLSMELKLADIVNWQAEE 1069
                            |:..|.:|.|:..||.|                    .|.:.|   |.|
 Frog   769 ----------------KLVLLNEKREQSREDLK--------------------GLEETV---ARE 794

  Fly  1070 LRPLDQLQESGVELQHHSTTAEESLNVEKPIQEQTER-TLTTEYERRIEQLEESLQRAQEELSIL 1133
            |:.|..|::..::        :.:|.|:|.::..::. ..:...:::|..||.:|    |:|:.:
 Frog   795 LQTLHNLRKLFIQ--------DLALRVQKRVELDSDNGGGSAAQKQKISFLENNL----EQLTKV 847

  Fly  1134 EKRKTDENKSLQLEYMAKIETSENENRSKFRAYCLDLKETQKRYEEQLQQTNEKLASVTTQCQVH 1198
            .|:...:|..|:.|.                          .:.|::|:.|.|::.:        
 Frog   848 HKQLVRDNADLRCEL--------------------------PKLEKRLRATAERVKA-------- 878

  Fly  1199 LDVIKRSLQEKITQAEKERNELAVRHKAELEKIRETLKEK 1238
               ::.:|:|....|.::|.    |::.|:::|:|.::.|
 Frog   879 ---LEGALKEAKENAMRDRR----RYQQEVDRIKEAVRAK 911

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
canaNP_001027247.1 KISc 8..316 CDD:214526 127/339 (37%)
Motor_domain 8..310 CDD:277568 126/333 (38%)
SMC_prok_B <471..1270 CDD:274008 133/779 (17%)
Mplasa_alph_rch 924..1647 CDD:275316 57/316 (18%)
CENP-H 1204..>1266 CDD:283493 9/35 (26%)
CALCOCO1 <1489..1850 CDD:285171
kif5cXP_002935337.3 KISc_KHC_KIF5 6..327 CDD:276820 126/333 (38%)
COG4372 469..>673 CDD:226809 49/315 (16%)
SMC_prok_B 580..>912 CDD:274008 84/530 (16%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000669
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.910

Return to query results.
Submit another query.