DRSC/TRiP Functional Genomics Resources

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Protein Alignment PGRP-LD and PGRP-LF

DIOPT Version :10

Sequence 1:NP_001137893.1 Gene:PGRP-LD / 3771920 FlyBaseID:FBgn0260458 Length:327 Species:Drosophila melanogaster
Sequence 2:NP_648299.3 Gene:PGRP-LF / 39064 FlyBaseID:FBgn0035977 Length:369 Species:Drosophila melanogaster


Alignment Length:226 Identity:60/226 - (26%)
Similarity:101/226 - (44%) Gaps:39/226 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   127 PTLHEDCFNWRSVGLLVMCASALALAA-YLLWR---QTQTPDFGYRLSIVGHGIWSDMELQGRGT 187
            |..:|..|.:..:...|:....:.||| |.:|.   .|.:|:.|  |.|:....|          
  Fly    13 PINNEKRFRFELLYFCVILLMVVGLAAGYFMWMMSFSTHSPNKG--LHILDRSEW---------- 65

  Fly   188 LFDP---------IGVGTVIFTHTGSNEC--HDDCPDVLHKLERSHVG-----ELPYNFLVAGDC 236
            |.:|         :.|..:|..||.:..|  .|.|...:..::..|:.     ::.|||||.||.
  Fly    66 LGEPPSGKYPHLKLPVSNIIIHHTATEGCEQEDVCIYRMKTIQAFHMKSFGWVDIGYNFLVGGDG 130

  Fly   237 QVFEAQGWHYRSQYPRDLNGIDSLVMAFVGNFSGRPPIDCQLMAAQALILESLKRRILQPIYQLF 301
            |::..:|||.:.|:......| |:.:||:|.|....|...|:.||:.|:.|.::...|||.|.::
  Fly   131 QIYVGRGWHIQGQHVNGYGAI-SVSIAFIGTFVNMEPPARQIEAAKRLMDEGVRLHRLQPDYHIY 194

  Fly   302 VLG--SYTDALQREL----RHWPHYASHQTS 326
            ...  |.|::..::|    ::||.:....||
  Fly   195 AHRQLSPTESPGQKLFELMQNWPRFTQDPTS 225

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PGRP-LDNP_001137893.1 PGRP 169..306 CDD:128941 41/154 (27%)
PGRP-LFNP_648299.3 PGRP 57..199 CDD:128941 41/152 (27%)
PGRP 236..363 CDD:470657
Blue background indicates that the domain is not in the aligned region.

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