DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG4456 and STR18

DIOPT Version :9

Sequence 1:NP_001027116.1 Gene:CG4456 / 3771872 FlyBaseID:FBgn0001228 Length:111 Species:Drosophila melanogaster
Sequence 2:NP_001032159.1 Gene:STR18 / 836749 AraportID:AT5G66170 Length:138 Species:Arabidopsis thaliana


Alignment Length:95 Identity:28/95 - (29%)
Similarity:41/95 - (43%) Gaps:14/95 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 IDVRRKEELQQTGFIPAS--INIPLDELDKALNLDGSAFKN----KYGRSKPEKQSPIIFTCRSG 77
            :|||.::|.:: |...|:  :|||.     .||......||    :...|.......|:..|:||
plant    33 LDVRTQDEFRR-GHCEAAKIVNIPY-----MLNTPQGRVKNQEFLEQVSSLLNPADDILVGCQSG 91

  Fly    78 NRVLEA--EKIAKSQGYSNVVIYKGSWNEW 105
            .|.|:|  |.:|...||..|....|.:..|
plant    92 ARSLKATTELVAAVSGYKKVRNVGGGYLAW 121

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4456NP_001027116.1 RHOD_HSP67B2 2..107 CDD:238777 28/95 (29%)
STR18NP_001032159.1 PLN02160 1..138 CDD:177819 28/95 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0607
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 45 1.000 Inparanoid score I2670
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
43.820

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