DRSC/TRiP Functional Genomics Resources

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Protein Alignment SkpF and SK6

DIOPT Version :10

Sequence 1:NP_611796.1 Gene:SkpF / 37713 FlyBaseID:FBgn0034863 Length:171 Species:Drosophila melanogaster
Sequence 2:NP_566978.1 Gene:SK6 / 824472 AraportID:AT3G53060 Length:85 Species:Arabidopsis thaliana


Alignment Length:100 Identity:42/100 - (42%)
Similarity:59/100 - (59%) Gaps:21/100 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    27 IKTLLE-DCPVEAENDTLIPLPNVNSTILKKVLIWAKHHREDIAEENEEEAAKSVAVQITPWDAE 90
            ||.:.| ||   |:|.  ||||||.|.||..|:.:.|.|   :.|..||:..|        ||||
plant     3 IKGMAEDDC---ADNG--IPLPNVTSKILLLVIEYCKKH---VVESKEEDLKK--------WDAE 51

  Fly    91 FL-SMDQGTLFELILAANYLDIPNLLNAACMTVAN 124
            |: .|:|..||::::|||||:|.:||:   :|.:|
plant    52 FMKKMEQSILFDVMMAANYLNIQSLLD---LTFSN 83

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SkpFNP_611796.1 BTB_POZ_SKP1 3..126 CDD:349631 41/99 (41%)
Skp1 112..157 CDD:460222 3/12 (25%)
SK6NP_566978.1 BTB_POZ 2..80 CDD:453885 40/95 (42%)

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