DRSC/TRiP Functional Genomics Resources

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Protein Alignment SkpF and CG15800

DIOPT Version :10

Sequence 1:NP_611796.1 Gene:SkpF / 37713 FlyBaseID:FBgn0034863 Length:171 Species:Drosophila melanogaster
Sequence 2:NP_611828.1 Gene:CG15800 / 37763 FlyBaseID:FBgn0034904 Length:157 Species:Drosophila melanogaster


Alignment Length:119 Identity:33/119 - (27%)
Similarity:66/119 - (55%) Gaps:14/119 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 VIKLQSSDGEIFETDIETAKCSSTIKTLLEDCPVEAENDTLIPLPNVNSTILKKVLIWAKHHRED 67
            :::.::.||.....::...:.|..|:.:.....|..:.|.::||..::|.:|.|:|:||::|   
  Fly     1 MVRFETRDGRTISVNLALLEKSLVIREMCRVGQVPEDEDFVLPLHGIHSNVLLKILLWAEYH--- 62

  Fly    68 IAEENEEEA---------AKSVAVQITPWDAEFLSMDQGTLFELILAANYLDIP 112
              |::||.|         |:.:.:||:.||.|||.::..::.:::...||||||
  Fly    63 --EKHEEPAWVDSKDPLPAEEIELQISDWDKEFLRVEIDSICKIMEGCNYLDIP 114

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SkpFNP_611796.1 BTB_POZ_SKP1 3..126 CDD:349631 33/119 (28%)
Skp1 112..157 CDD:460222 1/1 (100%)
CG15800NP_611828.1 BTB_POZ 1..123 CDD:453885 33/119 (28%)

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