DRSC/TRiP Functional Genomics Resources

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Protein Alignment SkpF and gcnt3

DIOPT Version :10

Sequence 1:NP_611796.1 Gene:SkpF / 37713 FlyBaseID:FBgn0034863 Length:171 Species:Drosophila melanogaster
Sequence 2:XP_004917977.1 Gene:gcnt3 / 100486486 XenbaseID:XB-GENE-5887146 Length:443 Species:Xenopus tropicalis


Alignment Length:93 Identity:20/93 - (21%)
Similarity:29/93 - (31%) Gaps:33/93 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    76 AAKSVAVQITPW---DAEFLSMDQGTLFELILAANYL------DIPNLLNAACMTVANMIKGRTT 131
            |:|.|.|....|   .|:...|:.  |.:..:...||      |.|...||..:.....:.|.. 
 Frog   190 ASKLVNVVYASWRRVQADLNCMED--LLQSKVPWKYLINTCGTDFPIKTNAEMVKALKSLNGHN- 251

  Fly   132 EEIRQTFHITNDFSPSEEDLMTMESEVP 159
                                 :||||:|
 Frog   252 ---------------------SMESEIP 258

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SkpFNP_611796.1 BTB_POZ_SKP1 3..126 CDD:349631 14/58 (24%)
Skp1 112..157 CDD:460222 6/44 (14%)
gcnt3XP_004917977.1 Branch 134..404 CDD:452742 20/93 (22%)

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