DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG3530 and YMR1

DIOPT Version :9

Sequence 1:NP_726322.1 Gene:CG3530 / 37707 FlyBaseID:FBgn0028497 Length:761 Species:Drosophila melanogaster
Sequence 2:NP_012644.1 Gene:YMR1 / 853574 SGDID:S000003871 Length:688 Species:Saccharomyces cerevisiae


Alignment Length:686 Identity:214/686 - (31%)
Similarity:319/686 - (46%) Gaps:192/686 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    78 LKKVENVRMIDRYNTKNPTVGTLYLTATHLIFVEPDSNKETWILHMHVASIEKLPLSTTGSPL-- 140
            :.||.|| ::.|..|  .|.|||:||..||||..|..:.|.|..:..:..:.|.|.||..|.|  
Yeast     6 IAKVSNV-VLHRRGT--ATQGTLHLTTHHLIFESPQLSTEFWFPYPLIYGVHKNPGSTLLSKLTS 67

  Fly   141 ---------------LIRCK---TFLSVTFVIPKD-------------SECHDVYTSLLKLFQPV 174
                           |.:.|   :|:::. ||.||             .:...||.|:|.|....
Yeast    68 TNQIQLEGTDSQNYKLYQGKDLWSFVNIK-VIGKDYAVFSLDFGGDLHLQARKVYDSILNLTVLS 131

  Fly   175 SINKLYCFNYQPN--KDDFPKNAGWDYFKLEAEFKHMLVPNE----AWTLCSMNEKYELCDTYPR 233
            :|.:||.|.|..|  :...|....||.:....||:...:.::    .|.|.::||.||.|.|||.
Yeast   132 NITQLYAFIYISNNLERKLPSPDSWDIYDPIKEFRRQGLDSKDETCPWRLSTVNEHYEFCPTYPS 196

  Fly   234 QIYVPKEATTLMLISSSRFRSKGRLPVLTYLHNNKASIC---RCSQPLSG-FSARCLEDEQML-- 292
            :::||:..:.::|..:|:|||:.|:|||||.|  ||:.|   |.||||.| .:.|.::||:::  
Yeast   197 KLFVPRSTSDILLKHASKFRSQKRIPVLTYHH--KATDCNILRSSQPLPGLINQRSIQDEKLVWE 259

  Fly   293 -------EAIRKTNSNTDYMYVVDTRPRINAMANRAAGKGYENEAFYENIKFH------------ 338
                   :.||:|..     .:||.|||.||:|..|.|.|.||   .:|..|.            
Yeast   260 SFNSFCNKDIRRTKH-----VIVDARPRTNALAQMALGGGTEN---MDNYNFFLADNNMGVDKSL 316

  Fly   339 --------FLGIENIHV---QRASLQKVL-EACEQKSPTMSAFINALESSGWLKHIRSILDTSSF 391
                    ||||:|||:   ..|.:.:|: :..:...|.....|.:.:.|.|||       .::.
Yeast   317 KLPTVTRLFLGIDNIHIVSNTAAYMTEVICQGGDLNLPLEQNLIRSQKFSNWLK-------LNTL 374

  Fly   392 IANAVD---KGV-----SVVVHCSDGWDRTAQVCSLAQLMLNPYYRTIKGFQALIEKDWLAFGHK 448
            |..:||   |.:     :|:||||||||||:||.||.::.|:|:|||.:||..|:||||.:|||:
Yeast   375 ILKSVDMLLKSIIFNHSNVLVHCSDGWDRTSQVVSLLEICLDPFYRTFEGFMILVEKDWCSFGHR 439

  Fly   449 FSERCGHIQTDAR---------------------------------------------------- 461
            |.||.||:.:|.|                                                    
Yeast   440 FLERSGHLNSDIRFHDNTMHSNFNDVDTNGDDLDIGVNTQDDYAEDDEGGEDETNLINLSRISKK 504

  Fly   462 -------------EVSPIFTQFLDCTWQLMSQRSEAFEFNERFLLILHDHVHSCQFGTFVGNCEK 513
                         .|||:|.|||||.:||::|..:.||||||||..|..|::|||:|||:.|.||
Yeast   505 FNENFKLNKKSLKFVSPVFQQFLDCVYQLLTQNPDLFEFNERFLRRLVYHLYSCQYGTFLSNSEK 569

  Fly   514 DRLDLKLAERTFSLWGYMANHLNEYINPLY-----------KPNVDEAIKAN-LAPQC--IKFWR 564
            ::....|..:|.|:|.|..:...::|||.:           ..|::|..|.. ::|..  :::|.
Yeast   570 EKFQQNLPNKTKSVWDYFRSRRKQFINPNFIQRKRSGMNEHDQNLEEEEKVEWISPDLKKVQWWW 634

  Fly   565 GMYSRFESGI-----HPREPLGDVLLD--SKEHCNS 593
            .:|.|.:|.:     |.|:.: .:.:|  ||||.||
Yeast   635 QLYGRKDSEMNDELRHKRDSV-PISVDKKSKEHSNS 669

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3530NP_726322.1 PH-GRAM_MTMR6-like 78..173 CDD:270030 37/127 (29%)
Myotub-related 179..514 CDD:284109 150/450 (33%)
FYVE_MTMR_unchar 693..753 CDD:277277
YMR1NP_012644.1 PH-like 1..>44 CDD:418428 18/40 (45%)
Myotub-related 152..570 CDD:399535 144/434 (33%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C157343241
Domainoid 1 1.000 194 1.000 Domainoid score I610
eggNOG 1 0.900 - - E1_KOG1089
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 220 1.000 Inparanoid score I767
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000303
OrthoInspector 1 1.000 - - otm46536
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR10807
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1956
SonicParanoid 1 1.000 - - X213
TreeFam 1 0.960 - -
1211.880

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