DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG3530 and MTMR12

DIOPT Version :9

Sequence 1:NP_726322.1 Gene:CG3530 / 37707 FlyBaseID:FBgn0028497 Length:761 Species:Drosophila melanogaster
Sequence 2:NP_001035536.1 Gene:MTMR12 / 54545 HGNCID:18191 Length:747 Species:Homo sapiens


Alignment Length:749 Identity:185/749 - (24%)
Similarity:300/749 - (40%) Gaps:192/749 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    48 PVPPFVS----------EKVVSWIEEEFNEAP---VFYNGNSVLKKVEN--------VRMI---- 87
            |.|.|||          ||.|:..|...:..|   :....::|||.|:.        .|::    
Human    16 PKPSFVSYVRPEEIHTNEKEVTEKEVTLHLLPGEQLLCEASTVLKYVQEDSCQHGVYGRLVCTDF 80

  Fly    88 --------------DRYNTKNPTVG--TLYLTATHLIFVEPDSNKETWILHMHVASIEKLPLSTT 136
                          |....||..:|  .:.|.....|:...|..|:|..     ..::|.|    
Human    81 KIAFLGDDESALDNDETQFKNKVIGENDITLHCVDQIYGVFDEKKKTLF-----GQLKKYP---- 136

  Fly   137 GSPLLIRCKTFLSVTFVI--PKDSECHDVYTSLLKLFQ-PVSINKLYCFNY----QPNKDDFPKN 194
             ..|:|.||......|.:  .|:.|...:.:.::...| |..:.:|:.|:|    |.|....|||
Human   137 -EKLIIHCKDLRVFQFCLRYTKEEEVKRIVSGIIHHTQAPKLLKRLFLFSYATAAQNNTVTDPKN 200

  Fly   195 AG----------WDYFKLEAEFKHMLVPNEAWTLCSMNEKYELCDTYPRQIYVPKEATTLMLISS 249
            ..          |:..:.:...|:..|        |:||.|::|:..|....||   |.|...:.
Human   201 HTVMFDTLKDWCWELERTKGNMKYKAV--------SVNEGYKVCERLPAYFVVP---TPLPEENV 254

  Fly   250 SRFRSKGRLPVLTY-LHNNKASICRCSQPLSGFSARCLEDEQMLEAIRKTNSNTDYMYVVDTRPR 313
            .||:..| :|:..: .||..|.:...:.|..       :|:.:|: |:|  |..|.:|....||.
Human   255 QRFQGHG-IPIWCWSCHNGSALLKMSALPKE-------QDDGILQ-IQK--SFLDGIYKTIHRPP 308

  Fly   314 INAMANRAAGKGYENEAFYENIKFHFLGIENIHVQRASLQK--VLEACEQKSPTMSAFINALESS 376
            ...:..             |::..:||.::.|....:..::  :::...:...|...:.:.||||
Human   309 YEIVKT-------------EDLSSNFLSLQEIQTAYSKFKQLFLIDNSTEFWDTDIKWFSLLESS 360

  Fly   377 GWLKHIRSILDTSSFIANAVD-KGVSVVVHCSDGWDRTAQVCSLAQLMLNPYYRTIKGFQALIEK 440
            .||..||..|..:..|...:: :.::|::...:..|....:.||.|||::|:.||..|||:||:|
Human   361 SWLDIIRRCLKKAIEITECMEAQNMNVLLLEENASDLCCLISSLVQLMMDPHCRTRIGFQSLIQK 425

  Fly   441 DWLAFGHKFSERCGHIQTDAREVSPIFTQFLDCTWQLMSQRSEAFEFNERFLLILHDHVHSCQFG 505
            :|:..||.|.:||.|::.:.:|..|:|..||||.|||:.|...||||.|.:|.:|.|.::...|.
Human   426 EWVMGGHCFLDRCNHLRQNDKEEVPVFLLFLDCVWQLVHQHPPAFEFTETYLTVLSDSLYIPIFS 490

  Fly   506 TFVGNC--EKDRLDLKLAERT-------FSLWGY------MANHLNEYINPLY--KPNVDEAIKA 553
            ||..|.  :||....:..:.|       .::|.:      .|..|.:  ||||  ||.:|:..: 
Human   491 TFFFNSPHQKDTNMGREGQDTQSKPLNLLTVWDWSVQFEPKAQTLLK--NPLYVEKPKLDKGQR- 552

  Fly   554 NLAPQCIKFWRGMYSRFESGIHPREPLGDVLLDSKEHCNS--LEDHVQHLTKRIASFKNYISKSA 616
                      :||  ||:   |.|: |...|..||.....  ..:...||      .||.:.|..
Human   553 ----------KGM--RFK---HQRQ-LSLPLTQSKSSPKRGFFREETDHL------IKNLLGKRI 595

  Fly   617 KKLQDATSAPGKVNKELSSNEINDN-KYNYDKKLSELSAADDDHPLKASNM-------------- 666
            .||         :|   ||:|:.|| :..||   |..|.:.|.|.|...::              
Human   596 SKL---------IN---SSDELQDNFREFYD---SWHSKSTDYHGLLLPHIEGPEIKVWAQRYLR 645

  Fly   667 -----------SFASLSLSAEQSSPPQALPEEIN 689
                       ..|:||...|.....|:|.|:|:
Human   646 WIPEAQILGGGQVATLSKLLEMMEEVQSLQEKID 679

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3530NP_726322.1 PH-GRAM_MTMR6-like 78..173 CDD:270030 23/125 (18%)
Myotub-related 179..514 CDD:284109 99/354 (28%)
FYVE_MTMR_unchar 693..753 CDD:277277
MTMR12NP_001035536.1 PH-like 26..202 CDD:327399 38/185 (21%)
PTPc 228..496 CDD:328744 87/294 (30%)
Interaction with MTM1. /evidence=ECO:0000269|PubMed:12847286 449..558 38/123 (31%)
3-PAP 563..686 CDD:315286 32/138 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165155577
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1089
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
32.740

Return to query results.
Submit another query.