DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG3530 and Sbf

DIOPT Version :9

Sequence 1:NP_726322.1 Gene:CG3530 / 37707 FlyBaseID:FBgn0028497 Length:761 Species:Drosophila melanogaster
Sequence 2:NP_477401.2 Gene:Sbf / 41427 FlyBaseID:FBgn0025802 Length:1993 Species:Drosophila melanogaster


Alignment Length:916 Identity:178/916 - (19%)
Similarity:321/916 - (35%) Gaps:290/916 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 IERQLSPTSALRLSFD-NISPETEEPPDGNKRLWGVPVPPFVSEKVVSWIEEEFNEAP--VFYNG 74
            ::.:.|....::::|| .::||..|.                ..|::|.....|:|..  .|.:.
  Fly  1017 LQLRSSSFQLIKVAFDPEVTPEQIES----------------FRKILSKARHPFDEFEYFAFQSY 1065

  Fly    75 NSVLKKVENVRMIDRYNT-KNPTVGTLYLTATHLIFVEPDSNKETWILHMHVASIEKLPLSTTGS 138
            .::|:.|..::..::|:| |.....||...|....|.:....|...:......|.:         
  Fly  1066 GTMLQGVAPLKTKEKYSTLKGFAKKTLLRGAKKAGFKQKQQTKRKLVSDYDYGSAD--------- 1121

  Fly   139 PLLIRCKTFLSVTFVIPKDSECHDVYTSLLKLFQPVSINKLYCFNYQPNKDDFPKNAGWDYFKLE 203
                 .:...|:...:....|......::.:|.....:.::...:|..:         |.....:
  Fly  1122 -----AQETQSIDDELEDGDEFETQNNAMPRLLTTKDVERMRERSYVQD---------WKRLGFD 1172

  Fly   204 AEFKHMLVPNEAWTLCSMNEKYELCDTYPRQIYVPKEATTLMLISSSRFRSKGRLPVLTYLHNNK 268
            ||      ....:.:.:.|..|..|.:||..|..|.:.:...::...|.....|:|:.|:.|.|.
  Fly  1173 AE------SQRGFRISNANTSYATCRSYPAIIVAPVQCSDAAIMHLGRCFKGQRIPLPTWRHANG 1231

  Fly   269 ASICRCSQPLSGFSARCLEDEQMLEAIRKTNSNTD---------------YMYVVDTRPRINAMA 318
            |.:.|..||.|         :.::..::.|..:|.               ::.:::|.|::..:|
  Fly  1232 ALLIRGGQPNS---------KSVIGMLKNTTGSTTNAHHDVTHYPEQDKYFLALINTMPKLTPLA 1287

  Fly   319 -------------------------------------------NRAA--GKG------------- 325
                                                       |:::  |||             
  Fly  1288 LNQYSGMNLSMSSLMGHSSSDDRQPLTPELSRKHKNNLDISDGNKSSQGGKGGTMKGNPKNSLAH 1352

  Fly   326 -YENEAFYE-----------NIKF--HFLGIE--NIHVQRASLQKVLEACEQKSPTMSA----FI 370
             :.....|.           |:.|  .|:.::  :|...|.:.:|::.||.....|..|    |.
  Fly  1353 PFRKMRLYALGEKSQAKSNMNVDFCADFIPVDYPDIRQSRPAFKKLIRACMPSHNTNEADGQSFA 1417

  Fly   371 NALESSGWLKHIRSILDTSSFIANAVD-KGVSVVVHCSDGWDRTAQVCSLAQLMLNPYYRTIKGF 434
            ..:|.|.||:.|.|::..|..:.:.:| :..||::...||.|.|||:.|:|||.|:||||::.||
  Fly  1418 KMVEQSDWLQQISSLMQLSGAVVDLIDLQESSVMLSLEDGSDVTAQLSSIAQLCLDPYYRSLDGF 1482

  Fly   435 QALIEKDWLAFGHKFSERC----GHIQTDAREVSPIFTQFLDCTWQLMSQRSEAFEFNERFLLIL 495
            :.|:||:||||||:|:.|.    .|..|:. ..:|.|.||||...||..|...|||||:.:|..|
  Fly  1483 RVLVEKEWLAFGHRFAHRSNLKPSHANTNI-AFAPTFLQFLDVVHQLQRQFPMAFEFNDFYLRFL 1546

  Fly   496 HDHVHSCQFGTFVGNCEKDRLDLKL-----------AERTFSLWGYMANHLNE--YINPLYKPNV 547
            ..|..||:|.||:.:||.:|.|..:           |:..|...|...|..::  .:.||     
  Fly  1547 AYHSVSCRFRTFLFDCELERSDSGIAAMEDKRGSLNAKHMFGAGGMATNGSDDECSVYPL----- 1606

  Fly   548 DEAIKANLAPQCIKFWRGMYSRFESGIHPREPLGDVLLDSKEHCNSLEDHVQHLTKRIASFKNYI 612
              .|::..||.                 |...:|          :|:.|:::....:...|.|::
  Fly  1607 --DIRSQRAPA-----------------PLNRIG----------HSIFDYIERQHNKTPIFYNFL 1642

  Fly   613 SKSAKKL--------------------QDATSAP-----GKVNKELSSNEINDNKY----NYDKK 648
            ....|.:                    :.|..||     ..|:.|:..:|....:.    .||..
  Fly  1643 YSGDKSVTLRPQNNVAALDLWCYYTNEELAQGAPYDLEVTTVDDEIDLSETKGKRMVITAGYDNM 1707

  Fly   649 -----------LSELSAADDDH---PLK----------------ASNMSFASLSLSAEQSSPPQA 683
                       |||:..|:.:.   |.|                |.|.|..::.:...|      
  Fly  1708 EKCNPSAYVCLLSEVKQAETERGHLPQKWLQVWNSLEVPQLEPVARNTSLGNIFVQTHQ------ 1766

  Fly   684 LPEEINSVAVDWK-------------------PMRNVTTCSCSTPFDQFSKKTHCWRCGDIFCER 729
              .:.:::.:..|                   |....|.|:..|..........|..||:.:.|:
  Fly  1767 --HKRSTLEIIMKGRLAGYQDKYFHPHRFEKHPYTTPTNCNHCTKLLWGPVGYRCMDCGNSYHEK 1829

  Fly   730 CIDKNV 735
            |.:.::
  Fly  1830 CTEHSM 1835

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3530NP_726322.1 PH-GRAM_MTMR6-like 78..173 CDD:270030 14/95 (15%)
Myotub-related 179..514 CDD:284109 107/432 (25%)
FYVE_MTMR_unchar 693..753 CDD:277277 10/62 (16%)
SbfNP_477401.2 uDENN 1..91 CDD:214824
DENN 142..325 CDD:280329
dDENN 384..452 CDD:129037
SBF2 585..807 CDD:289132
PH-GRAM_MTMR5_MTMR13 933..1047 CDD:275396 7/45 (16%)
Myotub-related 1161..1565 CDD:284109 107/428 (25%)
C1 1791..1838 CDD:237996 9/45 (20%)
PH_Sbf1_hMTMR5 1888..1993 CDD:269941
PH 1891..1992 CDD:278594
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45462311
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR10807
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.940

Return to query results.
Submit another query.