DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Mtmr6 and Mtmr12

DIOPT Version :10

Sequence 1:NP_726322.1 Gene:Mtmr6 / 37707 FlyBaseID:FBgn0028497 Length:761 Species:Drosophila melanogaster
Sequence 2:NP_001401964.1 Gene:Mtmr12 / 310155 RGDID:1307902 Length:748 Species:Rattus norvegicus


Alignment Length:672 Identity:162/672 - (24%)
Similarity:269/672 - (40%) Gaps:148/672 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    48 PVPPFVS----------EKVVSWIEE-EFNEAPVFYNGNSVLKKVENV-RMIDRYNTKNPTVGTL 100
            |.|.|||          ||.|:..|| ..:..|    |..:|.:...| :.:...:.:....|.|
  Rat    16 PKPSFVSYVRPEEIHTNEKEVTEKEEVTLHLLP----GEQLLCEASTVLKYVQEDSCQLGICGRL 76

  Fly   101 YLTATHLIFV-----EPDSNKETWILHMHVASIEKLPLSTTG---------------------SP 139
            ..|...:.|:     ..|:..||...: .:..:..:||....                     ..
  Rat    77 VCTDFRISFLGDEGSAVDNGAETHFKN-KIIGVNDIPLHCVDQIYGVFDEKKKPLFGQLKKYPEK 140

  Fly   140 LLIRCKTFLSVTFVI--PKDSECHDVYTSLLKLFQ-PVSINKLYCFNY---------QPNK---- 188
            |:|.||....:.|.:  .|:.|...:.:.::...| |..:.:|:.|:|         .|..    
  Rat   141 LVIHCKDLRVLHFCLRYTKEEEVKRIVSGIIHHTQSPKLLKRLFLFSYAAAVHGTAADPRNCTVM 205

  Fly   189 DDFPKNAGWDYFKLEAEFKHMLVPNEAWTLCSMNEKYELCDTYPRQIYVPKEATTLMLISSSRFR 253
            .|.||:..|:..:.:...|:..|        |:||.|.:||..|....||   |.|:.....||:
  Rat   206 FDTPKDWCWELERTKGSVKYKTV--------SVNEGYRVCDRLPAYFVVP---TPLLEDDVKRFQ 259

  Fly   254 SKGRLPVLTYLHNNKASICRCSQPLSGFSARCLEDEQMLEAIRKTNSNTDYMYVVDTRPRINAMA 318
            .:| :|:..:..:|.:::.:.|         .|..||...|::...|..|.:|....||....:.
  Rat   260 GRG-IPIWCWSCHNGSALLKMS---------ALPKEQDDSALQIQKSFLDGIYKTIHRPPYEMVK 314

  Fly   319 NRAAGKGYENEAFYENIKFHFLGIENIHVQRASLQK--VLEACEQKSPTMSAFINALESSGWLKH 381
            .             |::..:||.::.|.......::  ::::..:...|...:.:.|||||||..
  Rat   315 T-------------EDLSSNFLSLQEIQSSYCKFKQLFLIDSSSEFWDTDVKWFSLLESSGWLDI 366

  Fly   382 IRSILDTSSFIANAVD-KGVSVVVHCSDGWDRTAQVCSLAQLMLNPYYRTIKGFQALIEKDWLAF 445
            ||..|..:..|...:: :.::|::...:..|....:.||.|:|::.:.||..|||:||:|:|:..
  Rat   367 IRRCLKRAIEIIECLEAQNMNVLLLEENASDLCCLLSSLVQVMMDAHCRTWTGFQSLIQKEWVMG 431

  Fly   446 GHKFSERCGHIQTDAREVSPIFTQFLDCTWQLMSQRSEAFEFNERFLLILHDHVHSCQFGTFVGN 510
            ||.|.:||.|:....:|..|:|..||||.|||:.|...||||.|.:|.:|.|.::...|.||..|
  Rat   432 GHSFLDRCNHLHQSDKEEVPVFLLFLDCVWQLVHQHPPAFEFTETYLTVLSDSLYIPIFSTFFFN 496

  Fly   511 C--EKD----RLDLKLAERTFSL-----WGYMANHLNEYI--NPLY--KPNVDEAIKANLAPQCI 560
            .  :||    |..|....:..:|     |........:.:  ||||  ||.:|:..:..      
  Rat   497 SPHQKDTNMGRESLDAQSKPLTLLTVWDWSVQFEPKAQTLLRNPLYVEKPKLDKGQRKG------ 555

  Fly   561 KFWRGMYSRFESGIHPREPLGDVLLDSKEHCNS--LEDHVQHLTKRIASFKNYISKSAKKLQDAT 623
                   |||:   |.|: |...|..||.....  ..:...||      .||.:.|...||    
  Rat   556 -------SRFK---HQRQ-LSLPLTQSKSSPKRGFFREETDHL------IKNLLGKRISKL---- 599

  Fly   624 SAPGKVNKELSSNEINDNKYNY 645
                 :|   ||:::.||...:
  Rat   600 -----IN---SSDDLQDNSREF 613

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mtmr6NP_726322.1 PH-GRAM_MTMR6-like 78..173 CDD:270030 19/124 (15%)
PTP-MTMR6-like 202..501 CDD:350380 84/301 (28%)
FYVE_MTMR_unchar 693..753 CDD:277277
Mtmr12NP_001401964.1 PH-like 26..192 CDD:473070 30/170 (18%)
PTP-MTMR12 261..463 CDD:350442 58/224 (26%)
Interaction with MTM1. /evidence=ECO:0000250 450..559 37/121 (31%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 549..576 10/43 (23%)
3-PAP 560..686 CDD:463634 18/73 (25%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.