DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG3530 and mtmr12

DIOPT Version :9

Sequence 1:NP_726322.1 Gene:CG3530 / 37707 FlyBaseID:FBgn0028497 Length:761 Species:Drosophila melanogaster
Sequence 2:XP_012823020.2 Gene:mtmr12 / 100495643 XenbaseID:XB-GENE-6051019 Length:748 Species:Xenopus tropicalis


Alignment Length:603 Identity:143/603 - (23%)
Similarity:239/603 - (39%) Gaps:151/603 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 SPTSALRLSFDNISPE----TEEPPDGNKRLWGVPVPPFVSEKVVSWIEEEFNEAPVFYNGNSVL 78
            ||.....:|:  ::||    .|:.|...| :..||:.|           .||    |....|:||
 Frog    12 SPKQPSFVSY--LTPEEIDVKEKEPSAEK-VDNVPLLP-----------GEF----VLCEANTVL 58

  Fly    79 KKVENVRMIDRYNTKNPTVGTLYLTATHLIFV---EPD------SNK---ETWILHMHVASI--- 128
            |..::      ..::....|.|..|...:.|:   .||      .||   |..|....|..:   
 Frog    59 KCTQD------EGSQRGVYGRLICTNFRITFLGDEPPDDTIPEFKNKIFGENDITLQCVDQLYGV 117

  Fly   129 ----EKLPLSTTG-----SPLLIRCKTFLSVTFVI--PKDSECHDVYTSLLKLFQ-PVSINKLYC 181
                :|..||..|     ..|::.||.|....|.:  .|..|...:.:.::...| |..:.:|:.
 Frog   118 YDDKKKAILSGQGLKKYPERLIVYCKDFRVFHFCLSYTKQEEVKRIVSGIIHHTQSPKLLKRLFL 182

  Fly   182 FNYQPNKDDFPKNAGWDYFKLEAEFKHMLV---------------PNEAWTLCSMNEKYELCDTY 231
            |:|.         |....:|:.:..:..|:               .|..:.:.:.||.|::.:..
 Frog   183 FSYA---------AAVPRYKVTSFMEKTLMFETVKDWMAELERTKGNLHYKVLTANEGYKVSERL 238

  Fly   232 PRQIYVPKEATTLMLISSSRFRSKGRLPVLTY-LHNNKASICRCSQPLSGFSARCLEDEQMLEAI 295
            |:...||   .:|...:.:.|:.:| :|:..: ..|..|.:...|.|..............|:.:
 Frog   239 PQYFVVP---MSLPEDTLTDFQGRG-VPIWCWSCPNGSALLKMASLPKDVDDVALQHQRTFLDRV 299

  Fly   296 RKTNSNTDYMYVVDTRPRINAMANRAAGKGYENEAFYENIKFHFLGIENIHVQRASLQKVLEA-C 359
            .||..          ||.                  ||.::     ||::.....||.:|..| |
 Frog   300 EKTLH----------RPP------------------YEEVR-----IEDLTASLPSLSEVQVAYC 331

  Fly   360 EQKS-----------PTMSAFINALESSGWLKHIRSILDTSSFIANAVD-KGVSVVVHCSDGWDR 412
            ..|.           .|...:.::|::|.|::.||..|..:..:...:: ..::||:......|.
 Frog   332 RFKQLFLIENSTDFWDTDLKWFSSLDTSNWMEIIRQCLRKAVEVIEYLETHKINVVLKEDTASDF 396

  Fly   413 TAQVCSLAQLMLNPYYRTIKGFQALIEKDWLAFGHKFSERCGHIQTDAREVSPIFTQFLDCTWQL 477
            ...:.||.|:|::||.||..|||:|::|:|:..||.|.:||.|::.:..| :|:|..||||.|||
 Frog   397 CCIISSLVQIMMDPYCRTKIGFQSLVQKEWVMGGHCFLDRCNHLRKNENE-APVFLLFLDCVWQL 460

  Fly   478 MSQRSEAFEFNERFLLILHDHVHSCQFGTFVGNC--EKDRLDL------KLAE--RTFSLWGYMA 532
            :.|...||||.|.:|.:|.|.::...|.||..|.  :||...:      |..|  |.:::|.:..
 Frog   461 VQQYPLAFEFTETYLTVLSDSINIPIFSTFFFNSPWQKDTHSVVEGRQGKQGESLRFYTVWDWSV 525

  Fly   533 -------NHLNEYINPLY 543
                   :.||   ||||
 Frog   526 QFEPKAISFLN---NPLY 540

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3530NP_726322.1 PH-GRAM_MTMR6-like 78..173 CDD:270030 25/121 (21%)
Myotub-related 179..514 CDD:284109 89/365 (24%)
FYVE_MTMR_unchar 693..753 CDD:277277
mtmr12XP_012823020.2 PH-GRAM_MTMR12 25..201 CDD:275418 43/206 (21%)
PTP-MTMR12 259..460 CDD:350442 59/235 (25%)
3-PAP 560..678 CDD:403693
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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