DRSC/TRiP Functional Genomics Resources

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Protein Alignment Golgin245 and CIP1

DIOPT Version :9

Sequence 1:NP_611787.2 Gene:Golgin245 / 37702 FlyBaseID:FBgn0034854 Length:1489 Species:Drosophila melanogaster
Sequence 2:NP_001330520.1 Gene:CIP1 / 834184 AraportID:AT5G41790 Length:1586 Species:Arabidopsis thaliana


Alignment Length:1569 Identity:342/1569 - (21%)
Similarity:689/1569 - (43%) Gaps:376/1569 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   160 HKYRCRYTDLAKKYKELERDSSKARSVLVETQDKALRRISELREQCTLEQQAKAHLEEALRVEMD 224
            ||:|    :..|.:.|...|..|. .:|..|:.:...:::::   ..:.:....:.:|:.|..:.
plant     4 HKFR----ETLKSFFEPHFDHEKG-EMLKGTKTEIDEKVNKI---LGMVESGDVNEDESNRQVVA 60

  Fly   225 DMSCKMQAYQTKLQLLGENPENITAALERSGQQLESEQLIDLEESIGKSPLSTNGSSGVSDLQRL 289
            |:   ::.:.::.|.|....:::|.               ::.:.:.....|::.||..||....
plant    61 DL---VKEFYSEYQSLYRQYDDLTG---------------EIRKKVNGKGESSSSSSSDSDSDHS 107

  Fly   290 LKERDEQLKSVTEKYEAVRKQEEENVLLLAQTKQAIHTELELKDTEVRKLQEKLKQLESQRESHN 354
            .|.:        .|.....|.|::..|:....||    ::|..:.|:..|:.||.....::|:.:
plant   108 SKRK--------VKRNGNGKVEKDVELVTGALKQ----QIEAANLEIADLKGKLTTTVEEKEAVD 160

  Fly   355 NEVKEQFKKLQATKQEVDAKL-MATEHLLNTLKESYAIKEQQVVTLEAQLE-AIRVENE--QKVK 415
            :|::....||:.: :|:.:|| :.||.|.:  ::|.|:.:.:  .|..:|| |.:.|.:  ||::
plant   161 SELELALMKLKES-EEISSKLKLETEKLED--EKSIALSDNR--ELHQKLEVAGKTETDLNQKLE 220

  Fly   416 DLQKQNEDRNTQASDSSEQLKKLQAAVQDAESQLLSKDQLLE---SLRSEQAAKEQQLKHLKEQL 477
            |::|:.::..|:..:.   :|:.|.|.:.||....:.|||.:   :|:.:..|.||::..|...:
plant   221 DIKKERDELQTERDNG---IKRFQEAEKVAEDWKTTSDQLKDETSNLKQQLEASEQRVSELTSGM 282

  Fly   478 GKLKQENENY------------------------LDKLRENKKSSDSQ-----------TNEAQD 507
            ...::||::.                        |.:::|..|..:|:           ..|:..
plant   283 NSAEEENKSLSLKVSEISDVIQQGQTTIQELISELGEMKEKYKEKESEHSSLVELHKTHERESSS 347

  Fly   508 QQKKLQAAKDEAESKLLATEELLHSLRNDYKAQEEKVALLEDKLKTLSKE--------------- 557
            |.|:|:|..:.:| ||:|  :...||.|   |:||| .||..|:..||.|               
plant   348 QVKELEAHIESSE-KLVA--DFTQSLNN---AEEEK-KLLSQKIAELSNEIQEAQNTMQELMSES 405

  Fly   558 ------NDVNVEKLHHINEQREAQSTDSQQKINELRAAKDEAEAKLLSTEHSLNALQAALSAKEE 616
                  :.|...:|..:.:..|....||..:.:||       ||:|.|::..::.|.|:|.|.||
plant   406 GQLKESHSVKERELFSLRDIHEIHQRDSSTRASEL-------EAQLESSKQQVSDLSASLKAAEE 463

  Fly   617 QAASLE----QSLNALKTESEHSLQDLRLHNDQLLEIVQRHQQNDWEAQLARAREELAAIQSQRE 677
            :..::.    :::|.|: ::::::|:|..   :|.::...|::.  |::|:...|.....|....
plant   464 ENKAISSKNVETMNKLE-QTQNTIQELMA---ELGKLKDSHREK--ESELSSLVEVHETHQRDSS 522

  Fly   678 LHALELEKSLEMERESVAALNSEKASQEEQHRL---KLEQLQREIQILQ---------------- 723
            :|..|||:.:|..::.||.||....:.||:.::   |:.:|..||:..|                
plant   523 IHVKELEEQVESSKKLVAELNQTLNNAEEEKKVLSQKIAELSNEIKEAQNTIQELVSESGQLKES 587

  Fly   724 ---------------DQHANSESETVAALKGQLEALSQDLATSQASLLAKEKELKASGNK----- 768
                           :.|....|..|:.|:.|||:..|.::.....|...|:|.||..:|     
plant   588 HSVKDRDLFSLRDIHETHQRESSTRVSELEAQLESSEQRISDLTVDLKDAEEENKAISSKNLEIM 652

  Fly   769 -------------LNKIKKQHEQHQAKSSDQSARLEALQSELADRLSHSRQVESEKEELQARVTG 820
                         ::::.:..::|:.|.|:.|:.:::...::||........|.||:.|..|:..
plant   653 DKLEQAQNTIKELMDELGELKDRHKEKESELSSLVKSADQQVADMKQSLDNAEEEKKMLSQRILD 717

  Fly   821 ILEEI----GTMQAQM---QQVQDSHSELEREKRKLESRIESLQQEQVDSSAQDERTSAKLEEIQ 878
            |..||    .|:|..|   :|:::||...|||...|....|:.|:|          :|.:|.|::
plant   718 ISNEIQEAQKTIQEHMSESEQLKESHGVKERELTGLRDIHETHQRE----------SSTRLSELE 772

  Fly   879 SENTKLAERNCL--------LEEQTNHLESQLQAKQDEIGKIQAKLQQVLDEHSKLQNAQELMDH 935
            :: .||.|:..:        .||:...|.|.:....||:.:.|:|:|:::.|.::.::.....::
plant   773 TQ-LKLLEQRVVDLSASLNAAEEEKKSLSSMILEITDELKQAQSKVQELVTELAESKDTLTQKEN 836

  Fly   936 DHRTLQDKCDAYEKDKLLTKHTLDC-LQSASEELHRVKANL---DRELKEQDQQLSELRERQREQ 996
            :..:..:..:|:::|.......|:. ::||.|::..:..||   :.|.|...||:||:..:.:..
plant   837 ELSSFVEVHEAHKRDSSSQVKELEARVESAEEQVKELNQNLNSSEEEKKILSQQISEMSIKIKRA 901

  Fly   997 EQQLKDQAERCAKLKAQNSESETQLQATISNLREQLDAYKQTEQGIQEKLQATNSSYTTQIATLE 1061
            |..:::.:....:||..::|.:.:|    .:||:..:.:::              ..:||:..||
plant   902 ESTIQELSSESERLKGSHAEKDNEL----FSLRDIHETHQR--------------ELSTQLRGLE 948

  Fly  1062 ARWSAANSDVERLHEANDALQLEMEQLKIKHGQEREEVKESIAQKNRQVVELQEAMATRDRQLQE 1126
            |:..::...|..|.|:..|.:.|...:..|..:..:|::       |..:.:||..|...:..::
plant   949 AQLESSEHRVLELSESLKAAEEESRTMSTKISETSDELE-------RTQIMVQELTADSSKLKEQ 1006

  Fly  1127 KIEASEKLAKFDEILIENEYLNK-HTKQLEAELAESAELKEKLKSLQCELYVLQEKAEQHAVQMA 1190
            ..|...||.    :|.|.:..:: ..|:|||.:   |.|:.:|:|::..:..|:.:.......:.
plant  1007 LAEKESKLF----LLTEKDSKSQVQIKELEATV---ATLELELESVRARIIDLETEIASKTTVVE 1064

  Fly  1191 EKETQSATATAEVSELKKAIEEQAVELT--------RQKEHASFV---TEQSDAVQKDL--LQAQ 1242
            :.|.|:....|.:|||:|.:||:..||:        ..|:.:|.:   |.:.|.::.:|  :..|
plant  1065 QLEAQNREMVARISELEKTMEERGTELSALTQKLEDNDKQSSSSIETLTAEIDGLRAELDSMSVQ 1129

  Fly  1243 QQLHDKQIELAMSRDEQA-----LLQAEADGLRQEVICLKEHLSPSTDSDSLRS-LNERLQRELE 1301
            ::..:||:   :.:.|:|     .|..|.:||||:|..|          ||.|: |..:|:::.|
plant  1130 KEEVEKQM---VCKSEEASVKIKRLDDEVNGLRQQVASL----------DSQRAELEIQLEKKSE 1181

  Fly  1302 DLKHKSAGAESNMQQEI-----------EELQANNQQMAERINELETLRAGIQAQQL---LASMA 1352
            ::. :.....:|:::||           ||:...::::..|..|||||  |.|..:|   |.:..
plant  1182 EIS-EYLSQITNLKEEIINKVKVHESILEEINGLSEKIKGRELELETL--GKQRSELDEELRTKK 1243

  Fly  1353 PKNVQ----------EAAAAGE---------------KAELESKLK-------EIMNEVQDVTNR 1385
            .:|||          |..|..|               |:|.|::|:       |:.|::.||  :
plant  1244 EENVQMHDKINVASSEIMALTELINNLKNELDSLQVQKSETEAELEREKQEKSELSNQITDV--Q 1306

  Fly  1386 NLFLEQKCENFLILEQSNERLKLQNAKLSRQLDETL--VSMQHSEA-----------------VP 1431
            ...:||:.. :..||:.::::.    :|.::.:.||  |::.:.||                 :.
plant  1307 KALVEQEAA-YNTLEEEHKQIN----ELFKETEATLNKVTVDYKEAQRLLEERGKEVTSRDSTIG 1366

  Fly  1432 ANTE-FEYLRNIMFQYLTGNTNNETLVKVISAV---LKFSPQQ----AQVALEKEH--------- 1479
            .:.| .|.|||.:  .:.|: ..|||::.||.:   |:.|.|:    .||..|||.         
plant  1367 VHEETMESLRNEL--EMKGD-EIETLMEKISNIEVKLRLSNQKLRVTEQVLTEKEEAFRKEEAKH 1428

  Fly  1480 -QRRSLLNK 1487
             :.::||.|
plant  1429 LEEQALLEK 1437

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Golgin245NP_611787.2 Smc 286..1089 CDD:224117 206/940 (22%)
Phage_GPO <306..421 CDD:301727 31/118 (26%)
Smc 737..1442 CDD:224117 183/827 (22%)
MIT_CorA-like <1244..>1333 CDD:294313 24/105 (23%)
Grip 1433..1477 CDD:197860 16/51 (31%)
CIP1NP_001330520.1 KIP1 14..78 CDD:311624 10/70 (14%)
SMC_N 134..913 CDD:330553 183/817 (22%)
SMC_N 656..1434 CDD:330553 187/846 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100282
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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