DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Golgin245 and Golga4

DIOPT Version :9

Sequence 1:NP_611787.2 Gene:Golgin245 / 37702 FlyBaseID:FBgn0034854 Length:1489 Species:Drosophila melanogaster
Sequence 2:NP_001178009.1 Gene:Golga4 / 501069 RGDID:1591925 Length:2213 Species:Rattus norvegicus


Alignment Length:2270 Identity:488/2270 - (21%)
Similarity:835/2270 - (36%) Gaps:857/2270 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MFANLKNKLIEEVKASPSKFQQFANAAQAAVSSSSSTTPNSETNT-SNNENFFSITEEDTP---- 60
            ||..||.|:.||.       ||...|...|.:||||:||   |.| |...:|....::.||    
  Rat     1 MFKKLKQKISEEQ-------QQLQQALAPAQASSSSSTP---TRTRSRTSSFTDQLDDATPNRES 55

  Fly    61 ---QNSPYRIQKLPATSASALRGRSTQSL--NGATSRTRKLSNSSMAS-DVSFRLPTYEAPAVYH 119
               |....::|....:..|..|....:||  :...|..|..|..|:.. |:...:.|::.|    
  Rat    56 GDTQTFAQKLQLRVPSMESLFRSPIKESLFRSSKESLVRTSSRESLNQVDLDCAVATFDPP---- 116

  Fly   120 LQSDLDETSSEFDDSASTARLDVITKDQLYDAYKKSLDRYHKYRCRYTDLAKKYKELERDSSKAR 184
              ||::   ||.:|:..::  |.::::||....::.......||.:|::|...::.|:|:..|.:
  Rat   117 --SDME---SEAEDAPWSS--DSLSREQLLQRLRRMERSLSSYRGKYSELVTAFQTLQREKKKLQ 174

  Fly   185 SVLVETQDKALRRISELREQCTLEQQAKAHLEEALRVEMDDMSCKMQAYQTKLQLLG-------- 241
            .:|.::|||:|||||||||:..::||||.||:|.....:::....:...||::.||.        
  Rat   175 GILSQSQDKSLRRISELREELQMDQQAKRHLQEEFDACVEEKDQYISVLQTQVSLLKQRLQNGPM 239

  Fly   242 ---------------------ENPENITAALERSGQQLES----EQLIDLEESIGKSPLSTNGS- 280
                                 |||.:..:.....|...::    :|.:..:|::.:....|.|| 
  Rat   240 SVDVPKPLPPVELQAEAHSDMENPADAASPFVGGGTSAKTLEMLQQRVKRQENLLQRCKETIGSH 304

  Fly   281 --------SGVSDLQRLLKERDEQLKSVTEKYEA---------------VRKQEEENVLLLAQTK 322
                    |....||..|:||.::|:.:.|.:.|               :.:.|::..:::.:.|
  Rat   305 KEQCALLLSEKEALQEQLEERLQELEKMKELHMAEKTKLITQLRDAKNLIEQLEQDKGMVITEAK 369

  Fly   323 QAIHTELELKDTEVRKLQEKLKQLESQRESHNNEVKEQFKKLQ-ATKQEVDAKLMATEHLLNTLK 386
            :.:...|||||.|:.:|:..::::.:|.|    |::||.:|.: |..:|:       |..|:|.:
  Rat   370 RQMLETLELKDDEIAQLRSHIQRMTTQGE----ELREQKEKSERAAFEEL-------EKALSTAQ 423

  Fly   387 ESYAIKEQQVVTLEAQLEAI-RVENEQKVK---DLQKQNEDRNTQASDSSEQ---LKKLQAAVQD 444
            ::...:.:..|.::.|::|: |...|::::   :|.:..::..:.|..:|||   |:||.|    
  Rat   424 KTEDAQRRMKVEMDEQIKAVERAGEEERLRLQHELSRVRQEAVSMAKKNSEQRADLQKLHA---- 484

  Fly   445 AESQLLSKDQ-------------------LLESLRSE----QAAKEQQ---------------LK 471
              .||.||:|                   .||..|||    ...||||               |.
  Rat   485 --EQLASKEQELSQKLESRERELQEQMRMALEKSRSEYLKLTQEKEQQESLALEELELQKKAILT 547

  Fly   472 HLKEQLGKLKQENENYLDKLRENKKSSDSQTNEAQDQQKK----LQAAKDEAESKLLA------T 526
            ..:.:|..|:||.|.:..::||.:.|.:....|::.|.::    |:|.|.:.:::|.|      |
  Rat   548 ESENKLQGLRQEAEVHRTRIRELETSLEKSLQESRTQSERLAVHLEAEKSKHKTELTALAEKHRT 612

  Fly   527 E-------------ELLHSLRNDYKA---------QEEKVALLEDK------------LKTLSK- 556
            |             |.|.:|...::|         |:||.|||::|            .|||.| 
  Rat   613 ELEGLQQQQHSLWTERLQNLSQQHQAAVEELREKHQQEKDALLKEKESLFQAHIQDMNEKTLEKL 677

  Fly   557 ------------------------------------------ENDVNVEKLHHINEQREAQSTDS 579
                                                      |.::..::.||   |||..|...
  Rat   678 DKKQMELESVSSELSEALKARDQLAEELSVLRGDADQMKQALEAELQEQRRHH---QREVDSISG 739

  Fly   580 QQKI----------------NELRAAKDEAEAKLLSTEHSLNA--------LQAALS-------- 612
            ||:|                ..|...|||...:..:..|:|.|        ||.||:        
  Rat   740 QQEIIVRRTEKALKDEISQLGGLLKEKDEHLQERQAQVHNLEACLQKSAEELQQALAKLDLLQAQ 804

  Fly   613 ---------AKEEQAASLEQSLNALKTESEHSLQDLRLHNDQLLEI--------VQRHQQNDWEA 660
                     |.|||.|.::|.::.|:||.       .|...|::|:        |:...|.....
  Rat   805 QSTTHAQTGAYEEQLAQMQQKVSDLETEK-------NLLTKQVVEVETQKKRVCVELDAQRAQVQ 862

  Fly   661 QLARAREELA-AIQSQRELHALELEKSLEMERESVAALNSEKASQEEQHRLKLEQLQREIQILQD 724
            ||.|.|.||. .::|..:|...:|:.| .:|:|....:.:||.:...|.|   |:..:||:||: 
  Rat   863 QLERQRSELEDKVKSLAQLQESQLKNS-HVEKEQAQQILTEKENVILQMR---EEQAKEIEILK- 922

  Fly   725 QHANSESETVAALKGQLEALSQDLATSQASLLAKEKELKASGNKL----NKIKKQHE-------- 777
            |...|:.|:::.|..:.|...::.......:..|.||::....||    .|:||:.|        
  Rat   923 QKLFSKEESISILHEEYETKFKNQEKRMEKIKQKAKEMQEMKKKLLDQEAKLKKELENTVLELSQ 987

  Fly   778 ---QHQAK-----------SSDQSARLEALQSELADRL--SHSRQ-------------------- 806
               |..||           .||..:|||..|.:..:.|  :|.|:                    
  Rat   988 KEKQFNAKILEMAQANSAGISDTVSRLEENQRQQIESLTGAHQRELDDLIESWEKKLSQQAEELR 1052

  Fly   807 -----------------------VESEKEELQARVTGILEEI-------GTMQAQMQQ------- 834
                                   |:|||||:...|..:.|.:       ..:|.|::|       
  Rat  1053 DQHEKLIEEKEQELGELKQKVLTVQSEKEEVTQEVARLTEAVTGQDVTLAGLQGQLEQKSAAVLA 1117

  Fly   835 VQDSHSELEREKRKLESRIE-------SLQQEQVD-------------------SSAQDERTSAK 873
            :.|||::|:.:..|||..:.       |||:|..:                   .:|::|..|.|
  Rat  1118 LSDSHAQLQSQVEKLEVDLGCALNEKLSLQEELAELKMLAEREKLRVSELTGKVQAAEEELQSCK 1182

  Fly   874 --------------------LEEIQSENTKLAER-NCLLEEQTNHLESQLQAKQD---------- 907
                                |||:.|:..:..|| ..|||.:||.|....:.|.|          
  Rat  1183 SLHEVSRKSLEDKSLNLRTLLEELASQLDRHCERTKALLEAKTNELVCTSRDKADAILARLSRCQ 1247

  Fly   908 ---------------EIGKIQAKLQQVLDEHSKLQNA-----QELMDHDHRTLQDKCD------- 945
                           ::.:::|:|.|:.:|...|:|:     .:|.:.:::....|.|       
  Rat  1248 RHTATVGEALLRRMGQVSELEAQLTQLTEEQCTLKNSFQQVTNQLEEKENQIKTMKADMEGLIAE 1312

  Fly   946 --------------AYEKDKLLTKHTLDCLQSASEELHRVKANLDRELKEQDQQLSELRERQREQ 996
                          |.||:..:|:    ..:..||.::.|.. |..||.|:..:::.|.::..:.
  Rat  1313 KEALQQEGGQQQQVASEKESCITQ----LKKELSENINAVTL-LREELSEKKSEIASLSKQLSDV 1372

  Fly   997 EQQLK------DQAERCAKLKAQNSESETQLQATISNLREQLDAYKQTEQGIQEKLQATNSSYTT 1055
            ..||:      |:||..:.|..|:.|.|.||||.:..|..::||..:.:....|::...::.::.
  Rat  1373 SAQLENSISPSDKAEAISALSKQHEEQELQLQAQLRELSSKVDALSKEKMSALEQVDHWSNKFSE 1437

  Fly  1056 QIATLEARWSAANSDVERLHEANDALQLEMEQLKIKHGQEREE----VKESIAQKNR-------- 1108
            .....:.|::...|.::.|....|        ||.|...|::|    :||.:.|:|.        
  Rat  1438 WKKKAQPRFAQYQSTIKDLQTQLD--------LKAKEAGEKDEQIRLLKEDLDQQNERFESLKGE 1494

  Fly  1109 -----------------QVVELQEAMATRDRQLQEKIEA---------------SEKLAKFDEIL 1141
                             :||||::.:..|.::::...||               .:.|.:.:|:.
  Rat  1495 MEKKECDLETELKTRTARVVELEDCITQRKKEVESLNEALRNCSQQRDTEHSGLVQTLQRLEELG 1559

  Fly  1142 IENEY-----------LNKHTKQLEAEL----AESAELKEKLKSLQCELYVLQEKAEQHA---VQ 1188
            .|.:.           |.:....|||||    .|..::...:||...||..|::|.|..:   |:
  Rat  1560 QEKDNKVREAEETVLGLRERVSSLEAELRVVRKELDDVNSSVKSRDGELKALEDKLELESAAKVE 1624

  Fly  1189 MAEKETQSATA---------TAEVSELKKAIEEQAVELT-----RQKE---------------H- 1223
            :..|..|...|         .|:|.:..|..|.|..||.     |:|:               | 
  Rat  1625 LKRKAEQKLAAIRKQLLSQMEAKVQQCAKDTESQLSELRAKLQGREKQIHILEGKLKNLASSPHP 1689

  Fly  1224 -------------ASFVTEQSDA--------------VQKDLLQAQ---QQLHDKQIELAMSRDE 1258
                         ||...|.:|:              :|:.:::.:   |:|...:.|.|.|:.|
  Rat  1690 ERAVVSGSMGNVAASPEQEAADSQECTQKACKERVCVLQRSVIEKERLTQRLQQGEREAAPSQSE 1754

  Fly  1259 -------QALLQAEADGLRQEVI--CLKEHLS-----PSTDSDSL-------------------- 1289
                   ..|.:|.|..|..:|:  ||:|.|.     ||..|..:                    
  Rat  1755 VRHRELSVKLDRARAKQLEDQVLIGCLQEELEERMKCPSILSQPMGEETGKNNTGLKQNWASMVD 1819

  Fly  1290 --------RSLN----ERLQRELE----------------------------------------- 1301
                    :.|:    ||..||||                                         
  Rat  1820 TVQKTLQEKELSCQALERRVRELESDLITERDAHRLEVEKLTLKYEKSQSPQQEMGGKNTSVEIL 1884

  Fly  1302 --------------------------DLKHKSAG------------------------------- 1309
                                      ||:.|.||                               
  Rat  1885 EDRPEENSKSHVIESKLGTPMDGRHSDLESKLAGSEREKQKLSKEVGRLQKDLRALRKEHQQELD 1949

  Fly  1310 ---------AESNMQQEIEELQAN------------NQQMAERINELE-TLRAGI---------- 1342
                     ||..::||.|:|:..            |.|:|::..||| |::..|          
  Rat  1950 ILRKECEQEAEEKLKQEQEDLELKHSSTLKQLMREFNTQLAQKEQELERTVQETIDKAQEVEAEL 2014

  Fly  1343 ------QAQQLLASMAPK--NVQEAAAAGEKAELESKLKEIMNEVQDVTNRNLFLEQKCENFLIL 1399
                  :.|||...:|.|  ::|..|...|:. |:::.:|:..:|.|:..|...|::|.|:.|..
  Rat  2015 LQSHQEETQQLHRKIAEKEDDLQRTARRYEEI-LDAREEEMTAKVMDLQTRLEELQKKYEHRLEQ 2078

  Fly  1400 EQSNER----LKLQ-----------NAKLSRQ--------LDETLVSMQHSEAVPA--------- 1432
            |:|.:.    |:||           ::||..|        |::.|.|.:.|....|         
  Rat  2079 EESAKDSVTVLELQTQLAQKTTLISDSKLKEQELREQVHNLEDRLKSYEKSVCAAAVGAPYRGGN 2143

  Fly  1433 -----------NTEFEYLRNIMFQYLTGNTNNETLVKVISAVLKFSPQQAQVALEKEHQR 1481
                       .|||||||.::|:|:.|. ..:|:.|||:.||:|...|||..||:|..|
  Rat  2144 LYHTEVSLFGEPTEFEYLRKVLFEYMMGR-ETKTMAKVITTVLRFPDDQAQKILEREDAR 2202

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Golgin245NP_611787.2 Smc 286..1089 CDD:224117 253/1189 (21%)
Phage_GPO <306..421 CDD:301727 27/134 (20%)
Smc 737..1442 CDD:224117 238/1242 (19%)
MIT_CorA-like <1244..>1333 CDD:294313 38/253 (15%)
Grip 1433..1477 CDD:197860 21/43 (49%)
Golga4NP_001178009.1 PHA03252 177..>279 CDD:223024 28/101 (28%)
DUF3584 <281..>980 CDD:288943 164/730 (22%)
Myosin_tail_1 649..1645 CDD:279860 211/1023 (21%)
DUF342 <847..934 CDD:302792 26/91 (29%)
COG2604 <911..998 CDD:225324 23/90 (26%)
Smc 1353..2128 CDD:224117 149/783 (19%)
Grip 2155..2198 CDD:197860 21/43 (49%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166341442
Domainoid 1 1.000 275 1.000 Domainoid score I1697
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 276 1.000 Inparanoid score I2880
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0007308
OrthoInspector 1 1.000 - - oto98354
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR19327
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
88.080

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