DRSC/TRiP Functional Genomics Resources

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Protein Alignment Golgin245 and alm1

DIOPT Version :9

Sequence 1:NP_611787.2 Gene:Golgin245 / 37702 FlyBaseID:FBgn0034854 Length:1489 Species:Drosophila melanogaster
Sequence 2:NP_594092.1 Gene:alm1 / 2542883 PomBaseID:SPAC1486.04c Length:1727 Species:Schizosaccharomyces pombe


Alignment Length:1729 Identity:380/1729 - (21%)
Similarity:714/1729 - (41%) Gaps:427/1729 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 KNKLIEEVKASPSKFQQFANAAQAA---VSSSSSTTPNSETNTSN-NENFFSITEEDTP---QNS 63
            :|.|.:::.....:.|...|.|:.:   :|...:...:.:||..| |:.|.::|.|:..   .||
pombe    65 ENVLTKKINFLEQQLQSSNNQAEESRNLISVLRNENESLKTNLENQNKRFDALTTENQSLRRANS 129

  Fly    64 PYRIQKLPATSASALRGRSTQSLNGATSRTRKLSNSSMASDVSFRLPTYEAPAVYHLQSDLDETS 128
            ..:.|...|:...::.....::|..        .||.:...|.         :.:...||::|..
pombe   130 ELQEQSKIASEQLSIAKDQIEALQN--------ENSHLGEQVQ---------SAHQALSDIEERK 177

  Fly   129 SEFDDSASTARLDVITKDQLYDAYKKSLDRYHKYRCRYTDLAKKYKELERDSSKARSVL------ 187
            .:...::|::|:    |:::....|.:|         .:|||    .|:.|.||....|      
pombe   178 KQHMFASSSSRV----KEEILVQEKSAL---------VSDLA----SLQSDHSKVCEKLEVSSRQ 225

  Fly   188 VETQDKAL----RRISELREQCTLEQQAKAHLEE----ALRVEMDDMSCKMQAYQTKLQLLGENP 244
            |:..:|.|    ::.:||.|:..|.:|.:::...    :..:|.|..|.|      :|:...|..
pombe   226 VQDLEKKLAGLAQQNTELNEKIQLFEQKRSNYSSDGNISKILETDPTSIK------ELEEEVETQ 284

  Fly   245 ENITAALERSGQQLESEQLIDLEESIGKSPLSTNGSSGVSDLQRLLKERDEQLKSVTEKYEAVRK 309
            :.:||..|....:|:||.....|:...:..|..|.:..:::.::.|...:..|:.:.|||::|..
pombe   285 KRLTALWESKSSELQSEVAALQEKLTSQQSLYNNVTEELNNNKQQLLISENSLRELQEKYDSVVS 349

  Fly   310 Q-----EEENVLL---------LAQTKQAIHTELELKDTEV----RKLQEKLKQLESQRESHNNE 356
            :     |.:|..:         |||...|:... |...|:|    .|||:|:..|:.|.:...|:
pombe   350 ELQVVKENKNTSVSAGVGLFSPLAQKLSAVQNP-EFSFTKVYSDNMKLQQKVSSLKLQLDRLTNK 413

  Fly   357 VK---EQFK-KLQATKQEVDAKLMATEHLLNTLKESYAIKEQQVVTLEAQLEAIRVENE------ 411
            ..   ||.| ::...||: .::::.....:|.|.||.......:..::|:|.:.::..|      
pombe   414 FSSFCEQVKQRIPVVKQQ-RSEIVRNNIYMNFLSESLETSNNNLTKVQAELLSTKMRQEACYLQL 477

  Fly   412 ----QKVKDLQKQ-----------NE--DRNTQA-------------SDSSEQL--KKLQ--AAV 442
                .:..||.::           ||  .||..|             |.:||.|  |:|.  :::
pombe   478 TASRTQCSDLSREVICLMAELDHLNETKSRNVPATVQVALDEYAQNPSTASETLVNKELANFSSI 542

  Fly   443 QDAESQLLSKDQLLESLRSEQAAKEQQLKHLKEQLGKLKQENENYLDKLRENKKSSDSQTNEAQD 507
            ::|.|:.|   :|.|.:|:.:...|.|.:.::.|:....:||.|   .|.|..|:.:|:.|.::.
pombe   543 KEAVSKTL---ELREKVRALECDVEIQKQTVQYQISNAVKENSN---TLSEQIKNLESELNSSKI 601

  Fly   508 QQKKLQAAKDEAESKLLATEELLHSLRNDYKAQEEKVALLEDKLKTLSKENDVNVEKLHHI--NE 570
            :.:.|.     .|..||  :|:|.:.|:...:.......::||:|::. |:...:||.:.:  ||
pombe   602 KNESLL-----NERNLL--KEMLATSRSSILSHNSSAGNIDDKMKSID-ESTRELEKNYEVYRNE 658

  Fly   571 Q---REAQSTDSQQKINELRAAKDEAE----AKLLSTEHSLNALQAALSAKEEQAASLEQSLNAL 628
            .   :|:.|..:|..::|:.|.:.|.|    .:.|||:...||               ...:.|.
pombe   659 MTAIQESLSKRNQDLLSEMEAIRKELENSKYQQQLSTDRLTNA---------------NNDVEAF 708

  Fly   629 KTESEHSLQDLRLHNDQLLEIVQRHQQNDWEAQLARAREELAAIQS-----QRELHALELEKSLE 688
            |.|:    ::||..|..|.:|:.|..|     :.::..|||..:.|     :.||:|.:.||.|.
pombe   709 KKEA----KELRSINQNLQDIISRQDQ-----RASKFAEELLHVNSLAERLKGELNASKGEKDLR 764

  Fly   689 MERESVAALNSEKASQEEQHRLKLEQLQREIQILQDQHANSESETVAALKGQLEALSQDLATSQA 753
            ...:......::|...|   |.:|..|..::|...:|...|:    ||.|.:.|:..:.|:.|..
pombe   765 KRTQERLISENDKLLAE---RERLMSLVSDLQTFLNQQQLSD----AARKVKFESEKESLSLSLQ 822

  Fly   754 SLLAKEKELKASGNKLNKIKKQHEQHQAKSSDQSARLEALQSELADRLSHSRQVESEKEELQAR- 817
            .|  ||...|.| |.|:.::|..|:   ...:.|:|::.|..|.......:|::...::.::.: 
pombe   823 KL--KESNEKMS-NDLHSLQKSLEK---SGIEYSSRIKTLMLEKQSLSEDNRKLLDNQQMMEIKL 881

  Fly   818 --VTGILE----EIGTMQAQM-QQVQDSHSELEREKRKLESRIESLQQEQVDSSAQDERTSAKLE 875
              :.|::|    ...|::|:. ||...|:||.|   ..|||.:..||.:.....:|...:...:|
pombe   882 QELNGVIELEKQRFSTLEAKFTQQKNTSYSERE---ALLESSLSDLQSKHTSLESQYNYSLRNIE 943

  Fly   876 EIQSENTKLAERNCLLEE----------------QTNH-----LESQLQAKQDEIGKIQAKLQQV 919
            ::|:. :||||.  ::|.                :.||     ||.::...||||.....:.:.:
pombe   944 QLQAA-SKLAEE--MVERVKTEYDEYRLQTSESLEKNHLKITSLEQRIVILQDEIASSSLRCENI 1005

  Fly   920 -----------LDEHSKLQNAQELMDHDHRTLQ--DKCDAYEKDKLLTKHTLDCLQSASEELHRV 971
                       |:|:..|.|  ||..|.:...|  :|.:.|::..||          .:|:|.:.
pombe  1006 TKDSETRVALLLEENKHLNN--ELSSHRNAEKQHLEKENDYKQQLLL----------VTEDLRKT 1058

  Fly   972 KANLDRE-LKEQDQQ--LSELRERQREQEQQLKDQAERCAKLKAQNSESET-QLQATISNLREQL 1032
            :.:.::| |:..|.:  |.:|||...:..:|::|..:..| |||..:||:. .:......||:::
pombe  1059 REDYEKELLRHADARSTLQKLREDYTKALEQVEDLNKEIA-LKAGINESQPFPISEKEDPLRQEV 1122

  Fly  1033 DAYKQTEQGIQEKLQATNSSY---TTQIATLEARWSAANSD----VERLHEANDALQLEMEQLKI 1090
            ...|:....:..:||::|.::   |:....|::......||    |:|:.:..:.:..:.:.|.:
pombe  1123 YVLKKQNAMLLTQLQSSNLNFAEITSPSPDLDSVMKLGLSDLQNHVKRISKEMEIISCQRQLLFL 1187

  Fly  1091 KHGQEREEVKESIAQKNRQVVELQEAMATRDRQLQEKIEASEKLAKFDEILIENEYLNKHTKQLE 1155
                |.:::|.::...||.:.:||..:..:|..     ..||.:.:....|.....||:..|.|.
pombe  1188 ----ENKKLKRTVESSNRVIADLQRGITEKDVS-----STSESVGERSNYLNMVALLNESNKSLR 1243

  Fly  1156 AELAES----AELKEKLKSLQCELYVLQEKAEQHAVQMAEKETQSATATAEVSELKKAIEEQAVE 1216
            ..|..:    .||:||:::|:.:|...:...||       .|:|..|..|.|.:|:.:.||    
pombe  1244 ENLERNEEVITELREKIETLKTDLANFRLNKEQ-------LESQLQTEKAAVKKLENSNEE---- 1297

  Fly  1217 LTRQKEHASFVTEQSDAVQKDLLQAQQQLHDKQIELAMSRDEQALLQAEADGLRQEVICLKEHLS 1281
               .|.|..                         |:.:|.:......::|..|:.|::. ||:| 
pombe  1298 ---YKRHNQ-------------------------EILLSLNSSTSTSSDASRLKNELVS-KENL- 1332

  Fly  1282 PSTDSDSLRSLNE---RLQRELEDLKHKSAGAESNM---QQEIEELQANN--------------- 1325
                   :..||:   .|:.|||.:|.||...|:..   |.:||:|:..|               
pombe  1333 -------IEELNQEIGHLKSELETVKSKSEDLENERAQNQSKIEQLELKNTKLAAAWRTKYEQVV 1390

  Fly  1326 -----------QQMAERINELETLRAGIQAQQLLASM-APKNVQEAAAAGE------------KA 1366
                       ||::::.:|||...|  :..||...: .|.....|....|            |.
pombe  1391 NKSLEKHNQIRQQLSQKTSELEAKVA--ECHQLNEQLNKPSATPTATTQSEPSTVSLEEFNSTKE 1453

  Fly  1367 ELES---KLKEIMN-------EVQDV---------TNRNLFL--EQKCENFLILE---------- 1400
            ||.|   ||.|||:       |::.|         |:::..:  |::.|...:::          
pombe  1454 ELSSTQRKLSEIMDILNTTKEELEKVRQNSNKSEGTSKDTEIPNEEEMERKKVMQQEVLRLRSRI 1518

  Fly  1401 ----QSNERLKLQNAKLSRQ---LDETLVSMQHSEAVPANTEFEYLRN---------IMFQYLTG 1449
                |.||.|:.||..|..|   |.||:||.:.:|:...:.:.:.|.|         :.||.:. 
pombe  1519 AKELQKNELLRKQNQVLQDQVKALQETVVSSEEAESASVHADTKDLENLKKTEEMLSVTFQVIF- 1582

  Fly  1450 NTNNETLVKVISAVLKFSPQQAQVALEKE-HQRRSLLNK 1487
               ||::....::...|:     ..::|| .:||.:|.|
pombe  1583 ---NESISDFSTSTADFT-----TFVQKEWEKRREILQK 1613

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Golgin245NP_611787.2 Smc 286..1089 CDD:224117 211/931 (23%)
Phage_GPO <306..421 CDD:301727 31/157 (20%)
Smc 737..1442 CDD:224117 188/853 (22%)
MIT_CorA-like <1244..>1333 CDD:294313 25/120 (21%)
Grip 1433..1477 CDD:197860 7/52 (13%)
alm1NP_594092.1 Smc 84..885 CDD:224117 196/893 (22%)
SMC_prok_B 764..1567 CDD:274008 197/893 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100282
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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