DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Golgin245 and Golgb1

DIOPT Version :9

Sequence 1:NP_611787.2 Gene:Golgin245 / 37702 FlyBaseID:FBgn0034854 Length:1489 Species:Drosophila melanogaster
Sequence 2:NP_084311.1 Gene:Golgb1 / 224139 MGIID:1099447 Length:3238 Species:Mus musculus


Alignment Length:1800 Identity:412/1800 - (22%)
Similarity:760/1800 - (42%) Gaps:418/1800 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 ASPSKFQQFANAAQAAVSSSSSTTPNSETNTSNNE---NFFSITEE------------DTPQNSP 64
            |.||...:.| |.||.||.:.......|......|   ...||..|            |......
Mouse  1276 AQPSPPGETA-ALQATVSVAQIQAQLKEMEVEKEELELKVSSIASELAKKSEEVLLLQDQINEQG 1339

  Fly    65 YRIQKLPATSASALRGRSTQSLNGATSRTRKLSNSSMASDVSFRLPTY--EAPAVY-HLQSDLDE 126
            ..||.|.|.|..|  ...|:.|.      ::|.:|.:.......|.|.  |..|:: |:....:|
Mouse  1340 LEIQNLKAASVEA--QAHTELLK------QELESSQLKVAGLEHLKTLQPELDALHKHMGQKEEE 1396

  Fly   127 TS------SEFDDSASTARLDVITKDQLYDAYKKSLD---RYHKYRCRYT-----DLAKKYKELE 177
            .:      ||.:.:.:|.:.:::.:::|..|....|:   :.|:.|.:..     :|.||..|||
Mouse  1397 VNYLYGQLSEKEQTLTTVQTEMVEQERLIKALHTQLEMQAKEHEERLKQAQVEICELKKKPTELE 1461

  Fly   178 RDSS-------KARSVLVETQDKALRRISELREQCTLEQQAKAHLEEALRVEMDDMSCKMQ---A 232
            .:::       |.::.|: ::.:||:....|:||.:..:.|...|.::|......:|.:.|   |
Mouse  1462 EETNAKQQLQRKLQAALI-SRKEALKENKSLQEQLSSARDAVERLTKSLADVESQVSVQNQEKDA 1525

  Fly   233 YQTKLQLLGENPENITAALER-------------------SGQQLESEQLIDLEESIGKSPLSTN 278
            ...||.:|.|..:.:.|.::|                   .|...:.|:|::..||:..|.::.:
Mouse  1526 VLGKLTILQEERDKLIAEMDRFLLENQSLSGSCESLKLALGGLTEDKEKLMEELESVRSSKMAES 1590

  Fly   279 GSSGVSDLQRLLKERDEQLKSVTEKYEAVRKQEE--ENVL-LLAQTKQAIHTELELKDTEVRKLQ 340
                 ::.|...||..::.:.:.:.||.|..:.|  ::|: .:.|.||.::.:|...:::.|:.:
Mouse  1591 -----TEWQEKHKELQKEYEVLLQSYENVSNEAERIQHVVESVRQEKQELYAKLRSTESDKRERE 1650

  Fly   341 EKLKQLESQRESHNNEVKEQFKKLQATKQ-------EVDAKLMAT--------EHLLNTLKESYA 390
            ::|:..|.:.|    |:||:.:|...:||       |.:.:|.|.        |.:...|..:.:
Mouse  1651 KQLQDAEQEME----EMKEKMRKFAKSKQQKILELEEENDRLRAEAQPVGGTGESMEALLSSNSS 1711

  Fly   391 IKEQ-QVVTLE-----AQLEAIRVENE---QKVKDLQKQNE-----DRNTQASDSSEQLKKL--- 438
            :||: :.:|||     .:.||:..|.:   ::.::|:.|.|     ..:.:|::.|::.|.:   
Mouse  1712 LKEELEKITLEHKTLSKEFEALMAEKDALSEETRNLKLQVEAQVLKQASLEATEKSDEPKDVIEE 1776

  Fly   439 -----------------QAAVQDAESQLL---SKDQLLESLRSEQAAKE--QQLKHLKEQLGKLK 481
                             .|.::|:|:.|:   :|..:.|:..|....|.  |||..||.::.:|:
Mouse  1777 VTQAVVGKSQERDALSDSAKLEDSEAILMGDGAKPGVSETFSSHDDIKNYLQQLDQLKGRIAELE 1841

  Fly   482 QE--NENYLDKLRENKKSSDSQTNEAQDQQKKLQAAKDEAESKLLAT----EELLHSLRNDYKAQ 540
            .|  .:..|.:..||:|::......|:|.:.||  .::|...:....    |||....:....|:
Mouse  1842 MEKQKDRELSQALENEKNALLTQISAKDSELKL--LEEEVTKRTTLNQQIQEELCRVTKLKETAE 1904

  Fly   541 EEKVALLEDKLKTLSKEN--------DVNVEKLHHINEQREAQSTDSQQKINELRAAKDEAEAKL 597
            |||..|.|..:..|::.|        ||...::.  |||.|::..:.|:.::||...|.:...:.
Mouse  1905 EEKDDLEERLMNQLAELNGSIGNYYQDVTDAQIK--NEQLESEMRNLQRCVSELEEEKQQLVKEK 1967

  Fly   598 LSTEHSL---------------------NALQAALSAKE--------------EQAASLEQSLNA 627
            ...|..:                     ..||..|..|:              |:.::||:::.|
Mouse  1968 TKVESEIRKEYMEKIQGAQKGPANKSHAKELQELLREKQQEVKQLQKDCIRYLERISALEKTVKA 2032

  Fly   628 LKTESEHSLQDLRLHNDQLLEIVQRHQQNDWEAQLARAREELAAIQSQ--REL-HALELEKSLEM 689
            |:.....|.:||.:....|.:.|:..::.  :|:|:..:..|...||:  |.| ..|:|:|.|:.
Mouse  2033 LEFVHTESQKDLDVTKGNLAQAVEHRKKA--QAELSSFKILLDDTQSEAARVLADNLKLKKELQS 2095

  Fly   690 ERESVAALNSEK--------ASQEEQHRLKLEQLQREIQILQDQHANSESETVAALKGQLEALSQ 746
            .:||:.:...:|        ...||:||.:.:.:|.::..|..:.|:.| ||:|.::..|....|
Mouse  2096 NKESIKSQIKQKDEDLLRRLEQAEEKHRKEKKNMQEKLDALHREKAHVE-ETLAEIQVSLTRKDQ 2159

  Fly   747 DLATSQASLLAKEKELKASGNKLNKIKKQHEQ--HQAK-----------SSDQSARLE-----AL 793
            ::...|.||.:...:|.|....::.::...::  .:||           :.::..||:     ||
Mouse  2160 EMKELQGSLDSTLAQLAAFTKSMSSLQDDRDRVIDEAKKWERRFGDAIQTKEEEVRLKEENCIAL 2224

  Fly   794 QSELADRLSHSRQVESEKEELQARVTGIL--EEIGTMQAQ--MQQVQDSHSELEREKRKLESRIE 854
            :.:|       ||:....|||:..|:.:.  :||...:||  :|..|.::.:|:.|.::|.|::|
Mouse  2225 KDQL-------RQMAIHMEELKITVSRLEHDKEIWESKAQTELQHHQKAYDKLQEENKELTSQLE 2282

  Fly   855 SLQQEQVDSSAQDERTSAKLEEIQSENTKLAERNCLLEEQTNHLESQLQAKQDEIGKIQAKLQQV 919
            ..:|...||..:..:..::|:.::.:.|.|.......:|..|:||..::.::.:|...:...:|:
Mouse  2283 DARQLYHDSKNELTKLESELKSLKDQTTDLNNSLEKCKEHENNLEGIIKQQEADIQNCKFSCEQL 2347

  Fly   920 LDEHSKLQNAQELMDHDHRTLQDKCDAYEKDKL-LTKHTLDCLQSASEELHRVKANLDREL---- 979
               .:.|..::||...    |.|:.:|.|:..: |.....:.:|.|.||||:..:...:||    
Mouse  2348 ---ETDLAASRELTSR----LHDEINAKEQKIISLLSGKEEAIQLAVEELHQQHSKEIKELENLL 2405

  Fly   980 ---KEQDQQLSELRERQREQEQQLKDQAERCAKLKAQNSESETQLQA---TISNLREQLDA---- 1034
               :|::..|.|..:|..|:..||.:..|   .:|.::.|.:.||.:   ::|:|::..|.    
Mouse  2406 SQEEEENVALEEENKRALEKTNQLTEALE---AIKKESFEQKAQLDSFVKSMSSLQDDRDRIVSD 2467

  Fly  1035 YKQTEQ----GIQEKLQ------ATNSSYTTQIATLEARWSAANSDVERLHEANDALQLEMEQLK 1089
            |:|.|:    .|.||.|      |.|:....::..|.:.....||:       |..|..|:.|. 
Mouse  2468 YRQLEERHLSAILEKDQLIQDAAAENNKLKEEMRGLRSHMDDLNSE-------NAKLDAELVQY- 2524

  Fly  1090 IKHGQEREEVKESIAQKNRQVVELQEAMATRDRQLQEKIEASEKLAKFDEILIENEYLNKHTKQL 1154
                  |.::.|.||.|:.|..:|.:|      |||:..|...:..|.:|.|          |.|
Mouse  2525 ------RRDLNEVIAIKDSQQKQLLDA------QLQQNKELRNECTKLEERL----------KGL 2567

  Fly  1155 EAE-----LAESAELKEK------LKSLQCELYVLQE-----------KAEQHAVQ---MAEKET 1194
            |||     ::..|..|||      :|:||.:|..|||           ||::..:|   ||...:
Mouse  2568 EAEKQSLQMSSDALQKEKQGLSKEIKNLQTQLTALQEEGTLGVYHAQLKAKEEELQRLNMALSSS 2632

  Fly  1195 QSAT-------------ATAEVSE----LKKAI-----------------EEQAVELTR----QK 1221
            |..|             ||.:|||    |||.:                 ||:..||.|    .:
Mouse  2633 QKRTADLEEELVCVQKEATRKVSEIEDQLKKELKHLHHDAGIMRNETETAEERVAELARDLVEME 2697

  Fly  1222 EHASFVTEQSDAVQKDLLQAQQQLHDKQIELAMSRD----EQALLQAEADGLRQEVICLKEHLSP 1282
            :....||:::    |||:...|........|..|||    |...|:.:.|...:|:..|||....
Mouse  2698 QKLLTVTKEN----KDLMAQIQAFGRSMSSLQDSRDHATEELGDLKKKYDASLKELAQLKEWQDS 2758

  Fly  1283 STDSD-----------------SLRSLNERLQRELEDLKHKSAGAES--NMQQEIEELQANNQQM 1328
            |.:.|                 .|..||::|..:.|.|.|.|:..||  |..|.|.:...:.|..
Mouse  2759 SREGDVLSQAAFPLSTSENVLSRLEKLNQQLTSKDEQLLHLSSELESSHNQVQSISKAMTSLQNE 2823

  Fly  1329 AERI-NELETLRAGIQAQQLLASMAPKNVQEAAAAGEKAELESKLKEIMNEVQDVTNRNL-FLEQ 1391
            .:|: :|||..|...:.:|..|  ||      :||...||::| ||:.|:.:|:..:|.| .|:.
Mouse  2824 RDRLWSELEKFRKSEEGKQRAA--AP------SAASSPAEVQS-LKKAMSSLQNDRDRLLKELKN 2879

  Fly  1392 KCENFLILEQSNERLKLQNAKLSRQLDET-LVSMQHSEAVPANTEFEY-LRNIMF---------- 1444
            ..:.:|.:.|....|:...|:|....|:| .:.:...|....|..::: ||.:..          
Mouse  2880 LQQQYLQMSQEMTELRPLKAQLQESQDQTKALQVMEEELRQENLSWQHELRQLRMEKNSWELHER 2944

  Fly  1445 ----QYLTGNTNNETLVKVISAVLK--FSPQQAQVALEKEHQRRS 1483
                |:|...::.:..:..:.::|:  .|..|||: |..::||::
Mouse  2945 RMKEQFLMAISDKDQQLGHLQSLLRELRSSSQAQI-LSTQYQRQA 2988

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Golgin245NP_611787.2 Smc 286..1089 CDD:224117 216/966 (22%)
Phage_GPO <306..421 CDD:301727 31/141 (22%)
Smc 737..1442 CDD:224117 206/841 (24%)
MIT_CorA-like <1244..>1333 CDD:294313 28/112 (25%)
Grip 1433..1477 CDD:197860 11/60 (18%)
Golgb1NP_084311.1 SMC_prok_B <56..428 CDD:274008
SMC_prok_B <309..1037 CDD:274008
PRK12704 1167..>1242 CDD:237177
SMC_prok_B 1331..2164 CDD:274008 184/857 (21%)
Smc 1837..2656 CDD:224117 203/872 (23%)
Smc 2269..3057 CDD:224117 190/773 (25%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
21.960

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