DRSC/TRiP Functional Genomics Resources

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Protein Alignment Golgin245 and Golgb1

DIOPT Version :9

Sequence 1:NP_611787.2 Gene:Golgin245 / 37702 FlyBaseID:FBgn0034854 Length:1489 Species:Drosophila melanogaster
Sequence 2:XP_006248441.1 Gene:Golgb1 / 192243 RGDID:708429 Length:3228 Species:Rattus norvegicus


Alignment Length:1785 Identity:387/1785 - (21%)
Similarity:731/1785 - (40%) Gaps:447/1785 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    35 SSTTPNSETNTSNNENFFSITEEDTPQNSPYRIQKLPATSASALRGRSTQSLNGATSRTRKLSNS 99
            ||||  ||. |..:|....:.|:...|.  ..||.|.|.|..| :..:.|......|...|:::.
  Rat  1304 SSTT--SEL-TKKSEEVLLLQEQINEQG--LEIQNLKAASHEA-KAHTEQLKQELESSQLKIADL 1362

  Fly   100 SMASDVSFRLPTYEAPAVYHLQSDLDETS------SEFDDSASTARLDVITKDQLYDAYKKSLD- 157
            .....:...|.|.:.    |:....:|.|      .|.:.:.:|.:.::..:::|..|....|: 
  Rat  1363 EHLKTLQPELETLQK----HVGQKEEEVSYLVGQLGEKEQTLTTVQTEMEEQERLIKALHTQLEM 1423

  Fly   158 --RYHKYRCRYT-----DLAKKYKELERDSS-------KARSVLVETQDKALRRISELREQCTLE 208
              :.|:.|.:..     :|.|:.||||.:|.       |.::.|: ::.:||:....|:||.:..
  Rat  1424 QAKEHEERLKQVQVEICELKKQPKELEEESKAKQQLQRKLQAALI-SRKEALKENKSLQEQLSSA 1487

  Fly   209 QQAKAHLEEALRVEMDDMSCKMQ---AYQTKLQLLGENPENITAALERSGQQLESEQLIDLEESI 270
            :.|..||.::|......:|.:.|   |...||.||.|..:.:...:::|  .||::.|....||:
  Rat  1488 RDAVEHLTKSLADVESQVSVQNQEKDALLGKLALLQEERDKLIVEMDKS--LLENQSLGGSCESL 1550

  Fly   271 GKSPLSTNGSSGVSDLQRLLKERD--------------EQLKSVTEKYEAVRKQEEENVL----- 316
               .|:..|.:  .|.::|:||.:              |:.|.:.::|| |..|..|||.     
  Rat  1551 ---KLALGGLT--EDKEKLMKELESVRCSKIAESTEWQEKHKELQKEYE-VLLQSYENVSNEAER 1609

  Fly   317 ------LLAQTKQAIHTELELKDTEVRKLQEKLKQLESQRESHNNEVKEQFKKLQATKQEVDAKL 375
                  .:.|.||.::.:|...:::.|:.:::|:..|.:.|    |:||:.:|...:||:...:|
  Rat  1610 IQHVVESVRQEKQEVYAKLRSAESDKREREKQLQDAEQEME----EMKEKMRKFAKSKQQKILEL 1670

  Fly   376 M---------------ATEHLLNTLKESYAIKEQ------QVVTLEAQLEAIRVENE-------- 411
            .               |.|.:...|..:.::||:      :..||..:.||:..|..        
  Rat  1671 EEENDRLRAEAQPVGGANESMEALLSSNASLKEELERITLEYKTLSKEFEALMAEKNTLSEETRN 1735

  Fly   412 -------QKVKDLQKQNEDRNTQASDSSEQLKKL-------------QAAVQDAESQLL---SKD 453
                   |::|....:..:::.:..|..|::.:.             .|.::|||:.||   :|.
  Rat  1736 LKLQVEAQELKQASLETTEKSDEPKDVIEEVTEAVVGKSQEQDSLSENAKLEDAEATLLANSAKP 1800

  Fly   454 QLLESLRSEQAAKE--QQLKHLKEQLGKLKQE--NENYLDKLRENKKSSDSQTNEAQDQQKKL-- 512
            .:.|:..|......  |||..||.::.:|:.|  .:..|.:..||:|::......|:|.:.||  
  Rat  1801 GVSETFSSHDDINNYLQQLDQLKGRIAELEMEKQKDRELSQTLENEKNALLTQISAKDSELKLLE 1865

  Fly   513 ---------------------------QAAKDEAESKLL-ATEELLHSLRNDYKAQEE---KVAL 546
                                       :..||:.|.:|: ...||..|:.|.|:...:   |...
  Rat  1866 EEVAKINMLNQQIQEELSRVTKLKETAEEEKDDLEERLMNQLAELNGSIGNYYQDVTDAQIKNEQ 1930

  Fly   547 LEDKLKTLSK-ENDVNVEKLHHINEQREAQSTDSQQKINELRAAKDEAEAKLLSTEHSLNALQAA 610
            ||.:::.|.: .:::..||...:.|:.:.:|...::.:.:::.|:....:|:.:.|     ||..
  Rat  1931 LESEMQNLKRCVSELEEEKQQLVKEKTKVESEIRKEYMEKIQGAQKGPGSKIHAKE-----LQEL 1990

  Fly   611 LSAKEEQA--------------ASLEQSLNALKTESEHSLQDLRLHNDQLLEIVQRHQQNDWEAQ 661
            |..|:::.              ::||:::.||:.....|.:||......|.:.|:.|::.  :|:
  Rat  1991 LKEKQQEVKQLQKDCIRYLGRISALEKTVKALEFVHTESQKDLDATKGNLAQAVEHHKKA--QAE 2053

  Fly   662 LARAREELAAIQSQ--REL-HALELEKSLEMERESVAALNSEK--------ASQEEQHRLKLEQL 715
            |:..:..|...||:  |.| ..|:|:|.|:..:||:.:...:|        ...||:||.:.:.:
  Rat  2054 LSSFKILLDDTQSEAARVLADNLKLKKELQSNKESIKSQIKQKDEDLLRRLEQAEEKHRKEKKNM 2118

  Fly   716 QREIQILQDQHANSESETVAALKGQLEALSQDLATSQASLLAKEKELKASGNKLNKIK------- 773
            |.::..|..:.|:.| :|:|.::..|....:|:...|.||.:...:|.|....::.::       
  Rat  2119 QEKLDALHREKAHVE-DTLAEIQVSLTRKDKDMKELQQSLDSTLAQLAAFTKSMSSLQDDRDRVI 2182

  Fly   774 ---KQHEQH---QAKSSDQSARLE-----ALQSEL-------------ADRLSHSRQV-----ES 809
               |:.||.   ..::.::..||:     ||:.:|             ..||.|.:::     ::
  Rat  2183 DEAKKWEQRFGDAIQTKEEEVRLKEENCTALKDQLRQMTIHMEELKITVSRLEHDKEIWESKAQT 2247

  Fly   810 EKEELQARVTGILEEIGTMQAQMQQVQDSHSELEREKRKLESRIESL------------------ 856
            |.:..|.....:.||...:.:|:::....:.:.:.|..||||.::||                  
  Rat  2248 ELQHQQKAYDKLQEENKELMSQLEEAGQLYHDSKNELTKLESELKSLKDQSTDLKNSLEKCREHE 2312

  Fly   857 --------QQE-------------QVDSSAQDERT------------------SAKLEEIQ---- 878
                    |||             :.|.:|..|.|                  |.|.|.||    
  Rat  2313 NNLEGIIKQQEADIQNCKFNCEQLETDLTASRELTTRLHDEINVKEQKIISLLSGKEEAIQVAIA 2377

  Fly   879 ---------------------SENTKLAERNCLLEEQTNHLESQLQAKQDEIGKIQAKLQQVLDE 922
                                 .||..|.|.|....|:||.|...|:..:.|..:.:|:|...:..
  Rat  2378 ELHQQHSKEIKELENLLSQEEEENLTLEEENKRAVEKTNQLTEALETIKKESLEQKAQLDSFVKS 2442

  Fly   923 HSKLQNAQELMDHDHRTLQDK--CDAYEKDKLL---------TKHTLDCLQSASEELHRVKANLD 976
            .|.||:.::.:..|:|.|:::  ....|||:|:         .|..:..|:...::|:...|.||
  Rat  2443 MSSLQDDRDRIVSDYRQLEERHLSVILEKDELIQDAAAENNKLKEEIRGLRGHMDDLNSENAKLD 2507

  Fly   977 RELKE-----------QDQQLSELRERQREQEQQLKDQAERCAKLKAQNSESETQLQATISNLRE 1030
            .||.:           :|.|..:|.|.|.:|.::|:::   |.||:.:...||.:.|    :|:.
  Rat  2508 AELIQYRRDLNEVITIKDSQQRQLLEAQLQQNKELRNE---CVKLEGRLKGSEAEKQ----SLQM 2565

  Fly  1031 QLDAYKQTEQGIQEKLQATNSSYTTQIATLEARWSAANSDVERLHEANDALQLEMEQLKIKHGQE 1095
            .|||.::..||:.:::::.....|.                  ||| ..||.:...||:::. :|
  Rat  2566 SLDALQEENQGLSKEIKSFKEQLTA------------------LHE-EGALAVYHAQLRVRE-EE 2610

  Fly  1096 REEVKESIAQKNRQVVELQEAMATRDRQLQEKI-EASEKLAKFDEILIENE-YLNKHTKQLEAEL 1158
            .:::..:::...::.|:|||.:....::..:|: |..:||.:..:.|..|. .:...|:..|..:
  Rat  2611 VQKLTAALSSSQKRTVDLQEELVCVQKEASKKVSEIEDKLKRELKHLHHNAGIMRNETETAEERV 2675

  Fly  1159 AESA----ELKEKLKSLQCELYVLQEKAEQHAVQMAEKETQSATATAEVSELKKAIEEQAVELTR 1219
            ||.|    |:::||.::..|...|..:.:.....|:..:.....||.|:|:|||..:....||.:
  Rat  2676 AELARDLVEMEQKLLTVTKENKDLTAQIQAFGKSMSSLQDSRDHATEELSDLKKKYDASLKELAQ 2740

  Fly  1220 QKEHASFVTEQSDAVQKDLLQAQQQLHDKQIELAMSRDEQALLQAEADGLRQEVICLKEHLSPST 1284
                               |:.:|.|         .|:...|.||               ..|.|
  Rat  2741 -------------------LKGRQDL---------GRESDVLSQA---------------AFPLT 2762

  Fly  1285 DSDSLRSLNERLQREL----EDLKHKSAGAES--NMQQEIEELQANNQQMAERI-NELETLRAGI 1342
            .|:::.|..|:|.::|    |.|.|.|:..||  |..|...:...:.|...:.: ||||..|...
  Rat  2763 TSENISSRLEKLNQQLTSKDEQLLHLSSELESSHNQVQSFTKAMTSLQNERDHLWNELEKFRKSE 2827

  Fly  1343 QAQQLLASMAPKNVQEAAAAGEKAELESKLKEIMNEVQDVTNRNL-FLEQKCENFLILEQSNERL 1406
            :.:|  .|.||      :||...||::| ||:.|:.:|:..:|.| .|:...:.:|.:.|....|
  Rat  2828 EGKQ--RSAAP------SAASSPAEVQS-LKKAMSSLQNDRDRLLKELKNLQQQYLQMNQEITEL 2883

  Fly  1407 KLQNAKLSRQLDETL-------------VSMQ---HSEAVPANTEFEYLRNIMFQYLTGNTNNET 1455
            :...|:|....|:|.             :|.|   |...|..|:...:.|.:..|||...::.:.
  Rat  2884 RPLKAQLQESQDQTKALQMMKEELRQENLSWQHELHQLRVEKNSWELHERRMKEQYLMAISDKDQ 2948

  Fly  1456 LVKVISAVLK--FSPQQAQVALEKEHQRRS 1483
            .:..:..:|:  .|..|.|: |..::||::
  Rat  2949 QLGHLQNLLRELRSSSQTQI-LPTQYQRQA 2977

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Golgin245NP_611787.2 Smc 286..1089 CDD:224117 222/1082 (21%)
Phage_GPO <306..421 CDD:301727 32/161 (20%)
Smc 737..1442 CDD:224117 188/874 (22%)
MIT_CorA-like <1244..>1333 CDD:294313 21/95 (22%)
Grip 1433..1477 CDD:197860 10/45 (22%)
Golgb1XP_006248441.1 alaS <45..114 CDD:234701
PRK12704 63..>181 CDD:237177
SMC_prok_B 189..>947 CDD:274008
SMC_prok_B 720..1623 CDD:274008 80/337 (24%)
Smc 1339..2169 CDD:224117 181/855 (21%)
SMC_prok_B 1876..2632 CDD:274008 163/790 (21%)
Smc 2258..3046 CDD:224117 178/800 (22%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
11.000

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