DRSC/TRiP Functional Genomics Resources

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Protein Alignment Golgin245 and che-10

DIOPT Version :9

Sequence 1:NP_611787.2 Gene:Golgin245 / 37702 FlyBaseID:FBgn0034854 Length:1489 Species:Drosophila melanogaster
Sequence 2:NP_494819.3 Gene:che-10 / 173801 WormBaseID:WBGene00018051 Length:1955 Species:Caenorhabditis elegans


Alignment Length:1761 Identity:376/1761 - (21%)
Similarity:710/1761 - (40%) Gaps:442/1761 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 NLKNK-LIEEVKASPSKFQQFANAAQAAVSSSSSTTPNSETNTSN-------------NENFFSI 54
            |.:|: :|:::.....:|:|.|||...   .|.:.||:.:...|:             |.:..|:
 Worm    31 NRRNRQVIQDINDQLQRFRQRANAESI---ESFNLTPSPDVTLSSLAHPGLTHLHNQTNISMPSL 92

  Fly    55 TEEDTPQNSPYRI--QKLPATSASALRGRSTQSLNGATSRTRKLSNSSMASDVSFRLPTYEAPAV 117
            | .|.|.||...|  .:.|..:.:.||.|. :||.|     .:..::|...|......:....|.
 Worm    93 T-IDIPLNSNAMISSSRTPNYAINGLRNRH-KSLVG-----HRYRSTSPIGDYGRHRSSPRVLAH 150

  Fly   118 YHL--------QSDLDETSS--------------------EFDDSASTA----RLDVIT----KD 146
            |:|        :.:|||..:                    |.:|:|..|    |:|...    ..
 Worm   151 YNLDGADIGVGEENLDELFAKLKEELFKNNTLEEVNEMLREENDAALAANEHLRVDATNLSRQLQ 215

  Fly   147 QLYDAYKKSLDRYHKYRCRYTD-----------LAKKYKELERDSSKARSVLVETQDKALRRISE 200
            ||.........|:.....||.:           |.|::..::|...:.|:......|   |:::|
 Worm   216 QLQQQQHTESMRFRSENTRYRNQTETQHRKLISLWKEFTAVKRQLHELRTTTANDLD---RQLTE 277

  Fly   201 LREQCTLEQQAKAHLE-------EALRVEMDDMSCKMQAYQTKLQLLGENPENITAALERSGQQL 258
            .....||.::|..|.|       |.::.|.||:      ....|:.|....||...:.|::.::.
 Worm   278 FTRCATLMRKAIRHAEQKNLDQKEQMKREKDDV------LDETLRQLNSVTENYMKSEEKANERQ 336

  Fly   259 ---------------ESEQLIDLEESIGKSPLSTNGSSGVSD--------LQRLL---------- 290
                           ::::|.|:.|.:.|......|..|.::        :::||          
 Worm   337 RDLKRKEDECRKLREQNDELSDILEQLSKMAHEMAGGRGRNETPMDVARKMRKLLTTKNGEIDES 401

  Fly   291 --------KERDEQLKSVTEKYEAVRKQEEENVLLLAQTKQ-AIHTELE--LK--DTEVRKLQEK 342
                    ||||...|.: ||.|..||.:.|     |:.|: :::::.|  ||  |.|:||..||
 Worm   402 REAAKQAEKERDRAKKDL-EKEEKRRKDDRE-----AERKRSSVYSQREHDLKKLDDELRKASEK 460

  Fly   343 LKQLESQRESHNNEVKEQFKKLQATKQEVDAKLMATEHLLNTLKESYAIKEQQVVTLEAQLEAIR 407
            ::.||.||||.        :||..:.|             |:|.|::...:|.:       |.:.
 Worm   461 IRNLEEQRESQ--------EKLTISVQ-------------NSLNEAHRQHKQFI-------EELM 497

  Fly   408 VENEQKVKDLQKQNEDRNTQA--SDSSEQLKKLQAAVQDAESQLLSKDQLLE---SLRSEQAAKE 467
            :.:.:::    |:.||.:.:|  |..:|:..:.:....:.|......|:|.|   ||:.:.||.:
 Worm   498 IRHREEL----KEREDSHEEALRSKDTEERSRFEKERSEREKIRRESDELRETQRSLKGDVAAMK 558

  Fly   468 QQLKHLKEQLGKLKQENENYLDKLRENKKSSDSQTNEAQDQQKKL-QAAKDEAE--SKLLATEEL 529
            ..|.....:|..|:.|.:....||...::.:|.:..|..:.:.|| :.|:.|||  .:|...:.:
 Worm   559 TDLDDKTLRLDMLETERDELKKKLETEREQADQRDLEIAECRAKLDEMAEKEAELRKELAEFQAI 623

  Fly   530 LHSLRNDYKAQEEKVALLEDKLKTLSKE-NDVNVEKLHHINEQREAQST--DSQQKINELRAAKD 591
            :.::..:.|..:|:....:::|.||:.: ..:|.|..:...|.|...:|  :.:..|..:|.:..
 Worm   624 ITAMEGEGKLNQEQFLESKNELNTLTDQIESLNSEVENKNEEIRNLMATLQEKEVHIQNVRTSSH 688

  Fly   592 EAEAKLLSTEHSLNALQAALSAKEEQAASLEQSLNALKTESEHSLQDLRLHNDQLLEIVQRHQQN 656
            :..|........::.|:|.|:...||.....:.:    :|:.....|....||.|||.|.     
 Worm   689 QLTATYEEANGEIDILKAELTRLHEQVNERTRQI----SEANEKYDDAARKNDALLEDVA----- 744

  Fly   657 DWEAQLARAREELAAI-----QSQRE---LHAL---------ELEKSLEMERESVAALNSEKASQ 704
            .|:.:..:.:.||..:     :.:||   |.||         :|...|:.:..:|.:||.|.:|.
 Worm   745 TWQEKYEQLKMELEEMNRRGQEKEREEADLRALLDDLRGNFDKLTNELKQKGVTVDSLNEEISSL 809

  Fly   705 EEQ----------HRLKLEQLQR--EIQILQD-----QHANSESETVAALKGQLEALSQDLATSQ 752
            :||          ..|::|:|::  |.::.::     |.|..:.:.|.....:.||...:|....
 Worm   810 KEQLNKSEKERKEELLRMEELEQKNEAEMKEEYEVKLQLAEKDRQGVENFGKECEARMNELTKIH 874

  Fly   753 ASLLAKEKELKAS---------------GNKLNKIKKQHEQHQAKSSDQSARLEALQ----SELA 798
            ..|:.:..:||..               ..:|.|:.:|::..:|:.|::..|||:.:    :||.
 Worm   875 EMLMEEHDQLKVDHLHTEEEVERLKEKMRKELEKLNEQNDGDRAEWSNERNRLESSKNEAVTELQ 939

  Fly   799 DRLSHSRQVESEKEELQARVTGILEEIGTMQAQM------QQVQDSHSELEREKRKL---ESRIE 854
            :|:.....|..|||:.:..:...||:.......:      .::.|...|.:|:|.:.   |.|::
 Worm   940 ERVQKLEDVVKEKEDKEIALRRDLEDSHEKSRDLDDKLRKMELTDEEKEEDRKKEQKTLNEERMK 1004

  Fly   855 SLQQEQ------------VDSSAQDERTSAKLEEIQSENTKLAERNC---LLEEQTNHLESQLQA 904
            .::|::            :|.  |..|.|....:::.....:|||..   .||..|..|.|:|:.
 Worm  1005 LMEQKEEAMLVATKHATTIDQ--QTRRISVLEGDVEKLTAGIAERESSINALESNTMELISKLET 1067

  Fly   905 KQDEIGKIQAKLQQVLDEHSKLQNAQELM----DHDHRTLQDKCDAYEKDKLLTKHTLDCLQSAS 965
            .:.|:.|::.:|..:|.::|:|:|.:|.:    :.:.:.:||..|.              |:.|:
 Worm  1068 TEAELEKLKDELAVMLKQNSELKNGKEGLSEKWNEERKKIQDLADQ--------------LREAN 1118

  Fly   966 EELHRVK---ANLDRELKEQDQQLSELRERQREQEQQLKDQAERCAK-------LKAQNSESETQ 1020
            :.:|.::   .||:.:..|.||.:::|..:.|:.|.||.|:|   ||       |:....::::.
 Worm  1119 KVVHNMRMKNVNLEEKKNELDQNVTDLTNKVRQLEIQLMDKA---AKNEVSGDLLRKMEHDAQSM 1180

  Fly  1021 LQATISNLREQLDAYKQTE-QGIQEKLQATNSSYTTQIATLEARW-------SAANSDV------ 1071
            |:      :.|.:.::.|: :.:::.||..|......:||::|.:       .:|.||:      
 Worm  1181 LK------QAQNEQFRLTDLEKVRKALQDENQRLVNDLATVKAAFEVKRETSKSAISDILDKYRS 1239

  Fly  1072 ------------ERLHE--ANDALQLEMEQLKIKHGQER--------EEVKESIAQKNRQVVE-L 1113
                        :||..  |...|:||.::||.|....|        |||:..:|...:..|| |
 Worm  1240 AEEKANKGELDNQRLRSDLATVTLKLERQELKAKDSDNRLRDSQKRFEEVQSKLANLQKSAVESL 1304

  Fly  1114 QEAMATRDRQ----------------LQEKIE---------------------ASEKLAKFDEIL 1141
            |..|::..||                |.|..:                     |.:.:.....:.
 Worm  1305 QNPMSSNSRQNRSIYVDIPRAASSIGLNENSDEVPLRSSPSVRFADSSQNMQRAVDSMDVSSSVG 1369

  Fly  1142 IENEYLNKHTKQLEAELAESAELKEKLKSLQCELYVLQEKAEQHAVQMAEKETQSATATAEVSEL 1206
            :...:|.:..:||||:.|:.::..||.|.   ||....||.....:.:...|.|....|.|.:.:
 Worm  1370 VTLRFLKERIEQLEADNADLSDALEKAKD---ELRQRNEKLADRQMVIERVERQLVHITEERNTI 1431

  Fly  1207 KKAIEEQA------VELTRQKEHASFVTEQSDAVQKDLLQAQQQLHDKQIELAMSRDEQALLQAE 1265
            :..:..|.      .|.:|.:||      :..:::..:...:..|.:|:.:||..|.|..:|..:
 Worm  1432 ENRMTSQRQMYLTNEESSRSREH------EIRSMKARISTLELHLREKESKLAHLRKEIEVLHGQ 1490

  Fly  1266 A-DGLRQEVICLKEHLS--PSTDSDSLRSLNERL-----QRELEDLKHKSAGAES-NMQQEIEEL 1321
            . |.|..     ||..:  ........|.|.|:|     :|||...|.:...||: |:.:::|:|
 Worm  1491 LHDALES-----KEKATGLVGVQDSKHRDLEEQLDRANRERELAIGKQRRTLAENENLFRKLEQL 1550

  Fly  1322 QANNQQM------AERINE-----LETLRAGIQAQQLLASMAPKNVQEAAAAGEKAELESKLKEI 1375
            :...:|:      ..|:||     ||.||...:..:...:.|.|..:|.    |:|..|.:..|.
 Worm  1551 EKEREQLMREITDERRLNERNRTSLEELRVSERTWKSAMTTAKKPAEEQ----ERAVQEQRRWEE 1611

  Fly  1376 MNEVQDVTNRNLFLEQKCENFLILEQSNERLKLQNA---------KLSRQLDETLVSMQHSEAVP 1431
            .|  .::||||..|.::|:...:  :..::|...|.         :.:.:|...|:.||::  |.
 Worm  1612 SN--HEMTNRNTALTKECDRLRV--EMRDQLNRMNGINLRSVDFERKNEELSSKLIVMQNT--VT 1670

  Fly  1432 ANTEFE 1437
            |..:||
 Worm  1671 AMKKFE 1676

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Golgin245NP_611787.2 Smc 286..1089 CDD:224117 207/955 (22%)
Phage_GPO <306..421 CDD:301727 29/119 (24%)
Smc 737..1442 CDD:224117 186/867 (21%)
MIT_CorA-like <1244..>1333 CDD:294313 26/103 (25%)
Grip 1433..1477 CDD:197860 2/5 (40%)
che-10NP_494819.3 Rootletin <164..282 CDD:317452 21/120 (18%)
SMC_N <294..797 CDD:330553 118/555 (21%)
SMC_N 568..>1297 CDD:330553 162/762 (21%)
SMC_N 1029..1791 CDD:330553 154/695 (22%)
ClpB_D2-small <1766..>1856 CDD:331348
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100282
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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