DRSC/TRiP Functional Genomics Resources

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Protein Alignment LS2 and ATU2AF65A

DIOPT Version :10

Sequence 1:NP_611769.2 Gene:LS2 / 37681 FlyBaseID:FBgn0034834 Length:449 Species:Drosophila melanogaster
Sequence 2:NP_195387.1 Gene:ATU2AF65A / 829822 AraportID:AT4G36690 Length:573 Species:Arabidopsis thaliana


Alignment Length:475 Identity:170/475 - (35%)
Similarity:244/475 - (51%) Gaps:91/475 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 RSRSRSRSRSPFRSQSITRSR-PTRSDTIYTERTRLQRRFSRPPSSWDIPPEGYNHLTPQQYKAM 80
            ||| ||||||..||:..|||| |::|      :.|:......||:|                 ||
plant   143 RSR-RSRSRSKDRSERRTRSRSPSKS------KQRVSGFDMAPPAS-----------------AM 183

  Fly    81 LASG-QIASRI------------------LSDG-VHGGES-----AAISMITRQARRLYVGNIPF 120
            ||:| .:..::                  |..| ..||.|     |.....||.|||:|||.:..
plant   184 LAAGAAVTGQVPPAPPTLPGAGMFPNMFPLPTGQSFGGLSMMPIQAMTQQATRHARRVYVGGLSP 248

  Fly   121 GVTDEEMMQFFNHQIMALGFEAKSSHYMDGNAVLTCQTNLEKNFAFLEFRSIDEASQALNFDGMV 185
            ...::.:..||:..:.|:|.....    .|:||:....|.||.|||:|.||::|||.|::.||::
plant   249 TANEQSVATFFSQVMAAVGGNTAG----PGDAVVNVYINHEKKFAFVEMRSVEEASNAMSLDGII 309

  Fly   186 FRGQTLKIRRPHDYQPVPSISVSAMESYRSFRVPAINVAQQPAVTL-PVTTIVPDSPNKIYVGGL 249
            |.|..:|:|||.||.  ||::.:...|..|   |.:|:|   ||.| |..:...:.|::|:||||
plant   310 FEGAPVKVRRPSDYN--PSLAATLGPSQPS---PHLNLA---AVGLTPGASGGLEGPDRIFVGGL 366

  Fly   250 PTCLNQDQVKELLQSFGELKGLNLVMDTNTNLNKGFAFFEYCDPSVTDHAIAGLHGMLLGDRRLV 314
            |....:.||:|||:|||.|||.:||.|..|..:||:||..|.|.||||.|.|.|:|:.:||:.|.
plant   367 PYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLT 431

  Fly   315 VQRSIPGGKNAFPGHLPTVLQVPGIS--------------TLQDPGS-PTETLCLLNMVRPEELL 364
            |:|:..|          |:||.|...              .:..||: .|..:||..:|..:||.
plant   432 VRRANQG----------TMLQKPEQENVLLHAQQQIAFQRVMLQPGAVATTVVCLTQVVTEDELR 486

  Fly   365 DDEEFEDIRTDIKQECAKFGEVRSIKIPRPI--GQFPKRGCGKVFVQFESVEDSQKALKALSGRK 427
            ||||:.||..|::||..|||.:.::.||||.  |: |..|.||||:::...:.|.:|...::|||
plant   487 DDEEYGDIMEDMRQEGGKFGALTNVVIPRPSPNGE-PVAGLGKVFLKYADTDGSTRARFGMNGRK 550

  Fly   428 FSGRIVMTSYYDPEKYLADD 447
            |.|..|:..||..:|:...|
plant   551 FGGNEVVAVYYPEDKFEQGD 570

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LS2NP_611769.2 U2AF_lg 35..447 CDD:273727 157/455 (35%)
ATU2AF65ANP_195387.1 U2AF_lg 31..571 CDD:273727 170/475 (36%)

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