DRSC/TRiP Functional Genomics Resources

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Protein Alignment LS2 and AT2G33435

DIOPT Version :10

Sequence 1:NP_611769.2 Gene:LS2 / 37681 FlyBaseID:FBgn0034834 Length:449 Species:Drosophila melanogaster
Sequence 2:NP_001318342.1 Gene:AT2G33435 / 817909 AraportID:AT2G33435 Length:1325 Species:Arabidopsis thaliana


Alignment Length:482 Identity:130/482 - (26%)
Similarity:202/482 - (41%) Gaps:121/482 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 RRFRPMNRSWNALRSRSRSRSRSR--------SPF-RSQSIT----RSRPTRSDTIYTER----- 48
            ||.:|.:|..:....|.|||||..        ||. |::..|    |:...||:.:..:|     
plant   685 RREQPKSRQRDLREKRRRSRSRDHGQDRQKRSSPLPRAEKATSRHKRNHEERSENVVKDRSGKHH 749

  Fly    49 ------------TRLQRRFSRPPSSWDIPPEGYN----------------HLTPQQYKAMLA-SG 84
                        :...||:|...|...    ||:                :|:.::..|... :.
plant   750 CNDNEDKVTSTVSNKSRRYSASKSELG----GYSPRKRREQASTKAASPPNLSSEKKSAKWGLAA 810

  Fly    85 QIASRILSDGVHGG-----------------------------------------ESAAISMITR 108
            .:.:.:.||.|..|                                         :|..::..||
plant   811 TVTAGMFSDSVFSGLQAATQTAYPTISEASLTLLKPLMVMDAPFRTPPARQTTSFDSVQLTESTR 875

  Fly   109 QARRLYVGNIPFGVTDEEMMQFFNHQIMALGFEAKSSHYMDGNAVLTCQTNLEKNFAFLEFRSID 173
            :.||||..|:|...:::.:::.||..:::.|    |:|.......::|..|.||:.|.:||.:..
plant   876 RMRRLYAENVPDSASEKSLIECFNGYMLSSG----SNHIKGSEPCISCIINKEKSQALVEFLTPQ 936

  Fly   174 EASQALNFDGMVFRGQTLKIRRPHDYQPVPSISVSAMESYRSFRVPAINVAQQPAVTLPVTTIVP 238
            :||.||:.||..|.|..||||||.||....:..:...|       ||.|.         |:..|.
plant   937 DASAALSLDGCSFAGSNLKIRRPKDYVRTTNGELEKKE-------PAANA---------VSDNVE 985

  Fly   239 DSPNKIYVGGLPTCLNQDQVKELLQSFGELKGLNLVMDTNTNLNKGFAFFEYCDPSVTDHAIAGL 303
            ||.|||::||....::.:.:.|::..||.||....|  :|.:||:..||.||.|.|||..|.|||
plant   986 DSSNKIFIGGFSKAISSEMLMEIVSVFGPLKAYRFV--SNNDLNQRCAFLEYTDGSVTLKACAGL 1048

  Fly   304 HGMLLGDRRLVVQRSIPGGKNAFPGHLPTVLQVPGISTLQDP--GSPTETLCLLNMVRPEEL--L 364
            :||.||...:....:.|...:......|...   ||.:...|  |.|...|.|.|:|.||:|  .
plant  1049 NGMRLGGSVITAVCAFPDASSVAVNENPPFY---GIPSHAKPLLGKPKNILKLKNVVDPEDLTSF 1110

  Fly   365 DDEEFEDIRTDIKQECAKFGEVRSIKI 391
            .::|.::|..|::.|||:||.::||.|
plant  1111 SEQEVKEILEDVRLECARFGVIKSINI 1137

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LS2NP_611769.2 U2AF_lg 35..447 CDD:273727 116/436 (27%)
AT2G33435NP_001318342.1 PTZ00121 <3..783 CDD:173412 24/101 (24%)
U2AF_lg 681..1137 CDD:273727 129/480 (27%)
RRM_SF <1275..1311 CDD:473069
Blue background indicates that the domain is not in the aligned region.

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