DRSC/TRiP Functional Genomics Resources

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Protein Alignment LS2 and CstF64

DIOPT Version :10

Sequence 1:NP_611769.2 Gene:LS2 / 37681 FlyBaseID:FBgn0034834 Length:449 Species:Drosophila melanogaster
Sequence 2:NP_477453.1 Gene:CstF64 / 42239 FlyBaseID:FBgn0027841 Length:419 Species:Drosophila melanogaster


Alignment Length:117 Identity:33/117 - (28%)
Similarity:54/117 - (46%) Gaps:7/117 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly   235 TIVPDSPNKIYVGGLPTCLNQDQVKELLQSFGELKGLNLVMDTNTNLNKGFAFFEYCDPSVTDHA 299
            :|:..|...::||.:|....::::||:....|.:..|.||.|..:...|||.|.||.|......|
  Fly     9 SIMDKSMRSVFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFGFCEYKDQETALSA 73

  Fly   300 IAGLHGMLLGDRRLVVQRSIPGGKNAFPGHLPTVLQVPGISTLQDP-GSPTE 350
            :..|:|..:|.|.|.|..:.......   .:..:||.|.:   ::| |.|.|
  Fly    74 MRNLNGYEIGGRTLRVDNACTEKSRM---EMQQLLQGPQV---ENPYGEPCE 119

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LS2NP_611769.2 U2AF_lg 35..447 CDD:273727 33/117 (28%)
CstF64NP_477453.1 RRM_CSTF2_CSTF2T 10..94 CDD:410072 26/83 (31%)
CSTF2_hinge 111..190 CDD:433869 4/9 (44%)
CSTF_C 377..416 CDD:464130
Blue background indicates that the domain is not in the aligned region.

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