DRSC/TRiP Functional Genomics Resources

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Protein Alignment LS2 and U2af2

DIOPT Version :10

Sequence 1:NP_611769.2 Gene:LS2 / 37681 FlyBaseID:FBgn0034834 Length:449 Species:Drosophila melanogaster
Sequence 2:NP_001414127.1 Gene:U2af2 / 308335 RGDID:1310690 Length:475 Species:Rattus norvegicus


Alignment Length:481 Identity:236/481 - (49%)
Similarity:304/481 - (63%) Gaps:82/481 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 NALRSRSRSRSRSRSPFRSQSITRSRPTRSDTIYTERTRLQRRFSRPPSS--------------- 61
            |..|.||.||||||...| :|.:|.|..|..   ...:|.:||.|:|.:.               
  Rat    22 NRHRKRSHSRSRSRDRKR-RSRSRDRRNRDQ---RSASRDRRRRSKPLTRGAKEEHGGLIRSPRH 82

  Fly    62 ---------WDIPPEGYNHLTPQQYKAMLASGQIASRIL-----SDGVHGGESAAI--------- 103
                     ||:||.|:.|:||.|||||.|:|||.:..|     .||:      |:         
  Rat    83 EKKKKVRKYWDVPPPGFEHITPMQYKAMQAAGQIPATALLPTMTPDGL------AVTPTPVPVVG 141

  Fly   104 SMITRQARRLYVGNIPFGVTDEEMMQFFNHQIMALGFEAKSSHYMDGNAVLTCQTNLEKNFAFLE 168
            |.:|||||||||||||||:|:|.||.|||.| |.||...::    .||.||..|.|.:|||||||
  Rat   142 SQMTRQARRLYVGNIPFGITEEAMMDFFNAQ-MRLGGLTQA----PGNPVLAVQINQDKNFAFLE 201

  Fly   169 FRSIDEASQALNFDGMVFRGQTLKIRRPHDYQPVPSISVSAMESYRSFRVPAINVAQQPAVTLP- 232
            |||:||.:||:.|||::|:||:|||||||||||:|.:|                  :.|:|.:| 
  Rat   202 FRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPLPGMS------------------ENPSVYVPG 248

  Fly   233 -VTTIVPDSPNKIYVGGLPTCLNQDQVKELLQSFGELKGLNLVMDTNTNLNKGFAFFEYCDPSVT 296
             |:|:||||.:|:::||||..||.|||||||.|||.||..|||.|:.|.|:||:||.||.|.:||
  Rat   249 VVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVT 313

  Fly   297 DHAIAGLHGMLLGDRRLVVQRSIPGGKNA----FPGHL---PTVLQVPGI--STLQDPGSPTETL 352
            |.|||||:||.|||::|:|||:..|.|||    .|..:   |..|||||:  |.:|..|.|||.|
  Rat   314 DQAIAGLNGMQLGDKKLLVQRASVGAKNATLVSLPSTINQTPVTLQVPGLMSSQVQMGGHPTEVL 378

  Fly   353 CLLNMVRPEELLDDEEFEDIRTDIKQECAKFGEVRSIKIPRPIGQFPKRGCGKVFVQFESVEDSQ 417
            ||:|||.|||||||||:|:|..|::.||:|:|.|:||:||||:......||||:||:|.||.|.|
  Rat   379 CLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQ 443

  Fly   418 KALKALSGRKFSGRIVMTSYYDPEKY 443
            ||::.|:||||:.|:|:|.|.||:.|
  Rat   444 KAMQGLTGRKFANRVVVTKYCDPDSY 469

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LS2NP_611769.2 U2AF_lg 35..447 CDD:273727 224/458 (49%)
U2af2NP_001414127.1 None

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