DRSC/TRiP Functional Genomics Resources

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Protein Alignment side-V and side-VI

DIOPT Version :10

Sequence 1:NP_611765.2 Gene:side-V / 37679 FlyBaseID:FBgn0085400 Length:1174 Species:Drosophila melanogaster
Sequence 2:NP_001036705.1 Gene:side-VI / 4379854 FlyBaseID:FBgn0083950 Length:1087 Species:Drosophila melanogaster


Alignment Length:1325 Identity:343/1325 - (25%)
Similarity:506/1325 - (38%) Gaps:431/1325 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 PVAFVLVLATALSLVQGEQHPATAD----EGPLSEILTAVGSEVALPCDLVPGTGIVDKVQLVIW 73
            |:...|::. |::.....:|   ||    :|.:..:|  |.|...:.|| |..:...|||.||:|
  Fly     6 PILICLIMG-AITHANSHEH---ADGFKPDGEILRVL--VNSSAQIKCD-VGSSQADDKVLLVVW 63

  Fly    74 YRQGNVKPIYTFDARGRPLNLGIP--WADESVFNKKAHFHHDTDPPALRIKNIQTSDAGLYKCRV 136
            |:  |..|||::|.||  .:.|.|  |.||.|...:|.|....:|..|.|..::..|||.::|||
  Fly    64 YK--NNLPIYSYDTRG--AHAGTPSHWRDEEVLEDRAVFRTHKEPAELIINPVKEKDAGNFRCRV 124

  Fly   137 DFHKSPTRNWRINVTVLVPPTALTILDHHGAEIRDQTAGPYLEGDSIDLTCLSSGGVPPPRVSWW 201
            ||..|.|||..:|:.|:||||...|.:.....| |..||||.||.|:::||:..||.|||.|.|.
  Fly   125 DFKLSQTRNSNVNLEVVVPPTQPIIFNERRLRI-DSRAGPYEEGGSLEVTCVVYGGSPPPTVIWL 188

  Fly   202 R----EHALIDDSFQVLPDGSVRNVLRLKNIQRKDLLTMYTCQASNGHVVPALTKKVILDMNLPP 262
            .    :::::|.::    ||::.:.|.::|:.|.....:|||||||.|.....| .:.:|:.|.|
  Fly   189 MNGQLQNSVVDYTY----DGAINSKLVVRNLSRIHQHAVYTCQASNFHKKYVAT-NITIDLYLRP 248

  Fly   263 LSLLLQGLNHAVIAGTRSHVTCTAIGARPPPEIIWSKAGQIVRGATSSTSSDGNTTISELMLIPV 327
            |.:.:...|..:.|..:..:.|.|||:|||.:|.|......:.|.:...|.|||.:.|.|.:.|.
  Fly   249 LLVEISFNNQPMSADRKYEIECQAIGSRPPAKITWWMGNLELHGHSQKVSEDGNVSTSVLSITPT 313

  Fly   328 PEDNERQVVCSISLNAGITSQQLHEG-HTTVMTTLGNGHTGLYLKDSRVLNVTHAPIVNLNLGAP 391
            .||:.:.:.|.      .|::.:..| ..|.|.                |||...|.:.|:||:.
  Fly   314 REDHGKALSCR------ATNELVRNGIRETAMK----------------LNVFFIPTLQLDLGSN 356

  Fly   392 LDPDNLLKGTDVYLECDVKANPAITRVEWYHSDKQL-HSSR-GIIISNQTLVLQGISKSSHGQYF 454
            |:|:::.:|.|||.||.|.||||..:|.|.|:.:.: |:.| |:|:|:..|.|||:::...|.|.
  Fly   357 LNPEDIEEGDDVYFECKVHANPAAYKVVWKHNHQIIQHNQRAGVIVSSGDLALQGVTRHQAGNYT 421

  Fly   455 CRASNLQGSVSSNEVYLDVKYPPVCK-SESTIIRAALKQTINITCEVDANPVDNLNYKWHFNNSL 518
            |.|||::|...||.|.|.|.|.|:|: .:..|...|..:...|.|||||.|... |:||.|||:.
  Fly   422 CTASNVEGDGDSNVVELKVMYKPICRPDQKKIYGVARNEAAEIVCEVDAFPPPE-NFKWSFNNTA 485

  Fly   519 ESLIELPQLGQGAPVMLASGSDQSGYYQRSKRKHSHGMQQRLLHGRHGRMAAVRFEDEDEDGYGE 583
            |: .::|               |||:     |.||                              
  Fly   486 ET-FDMP---------------QSGF-----RPHS------------------------------ 499

  Fly   584 FEEYGDEVGQPFTQMVYSNMVHKNHVESSKQQQRKQLSPQQQQQQQQMASGGSSGDSHTPSGGVI 648
                                                            |.|              
  Fly   500 ------------------------------------------------AQG-------------- 502

  Fly   649 LERKRLVALHKQHHRGGVATPPTTTAAPPLNNVYSYHVESYESFGAISCVASSPMG-HSAPCWYH 712
                                  :|....|:..:         .||.|.|.|.:.:| ...||.:|
  Fly   503 ----------------------STLTYTPVKEM---------DFGTIMCWADNNVGQQKEPCVFH 536

  Fly   713 IQPADLPEPVKNCTAYNATANSLQIQCIPGYDGGIPQHFHAQIYDELNRQILYNASYKYSEFTVK 777
            :..|..||...|||..|.|::||::.||.|:|||:.|.|..:|:|:.:.|:..|.|.|::..:|.
  Fly   537 LIAAGKPEAPTNCTVVNQTSDSLEVYCIEGFDGGMRQWFLMEIFDQHSGQLQANISAKFAALSVT 601

  Fly   778 RLPSDSVFVIRITAVNAQGASKVAYRLRGRTLSAPLLRTASSTAVL--------VQLTPLL--GA 832
            .|.:..:|.|.:.|||.:|.|. |..|.|.||.|...:|.:.|:..        .:|||:|  |.
  Fly   602 GLDAGRLFRIYVYAVNGRGRSD-AIALDGYTLKAAEKQTVALTSYKGSAQSPDNFELTPILSIGI 665

  Fly   833 LVGVIATLILVAICVVIVIKFRSKRGGRRHGSGADATTTEA-----------DKGSAEPLSRNMG 886
            .||::..::.:.|..:..:|.||    .:|..........|           ||.|. |||.   
  Fly   666 FVGILVAIVCIGIGTIAALKLRS----HKHQQQQKFVHPNAKFSRPGNLQIKDKISL-PLSH--- 722

  Fly   887 SHSSLEDKNPDVVPQEANSEDEFHQEEKAFDRLNMESQRILYTPPTRINTASPPPPSLSP--TFG 949
            |....::|||||||.  |..|..::::.|           ..||...::|.|....|..|  |.|
  Fly   723 SEEMYDEKNPDVVPY--NEVDGEYKQKSA-----------TQTPSGHLSTTSEVEISCKPGSTSG 774

  Fly   950 K---------------------QYGELSLTTNPAFS----------------------------- 964
            .                     .|.|||||..|:.|                             
  Fly   775 TGIVQANSADSGTYQSSKDDELHYAELSLTNMPSGSSGASKKGQPMGGVGVVQHVVQQQQQQQQG 839

  Fly   965 -------------------------------LYNTPQRAPAVQRPVYTAPPPLLSTR--TPPNIY 996
                                           |......|..:|.|...||||.....  ..|.||
  Fly   840 QVQHPHQLLGGTLPHGSSMRKLLPTIPATATLQRHKPNAGGMQHPHQHAPPPTYDYDYFEEPTIY 904

  Fly   997 TRIPGRG-------------GGGGGATVTAAGAGGYHLPAYETRTSPTSPYGSTTTCTMPLLGGQ 1048
            .:|....             |.|.|:.|..|||            |.:||....|..|:      
  Fly   905 AQIDAYKTMQVDTGVVVAGVGAGAGSGVNGAGA------------SISSPGSHGTPSTV------ 951

  Fly  1049 SNGSLQSGGVGGVGGLVGGGACNTLP-HPGSLH------------VGG--ISAAL---------- 1088
            |.|::|               ..||| |||..|            .||  .||::          
  Fly   952 SPGTVQ---------------MYTLPQHPGGYHTLPHNHHAQQQMAGGPQNSASMMQMMQQQQQQ 1001

  Fly  1089 ------------------------TSSVTSGNITIGAAQSLLTSPRSQTATYSTTLGGVQSPLLM 1129
                                    ...:..|.:.:.:..|.|.|..:..|:.|::|.|     |.
  Fly  1002 QQQMHHHPASNMPPSYQQHQQQQQQQQMAHGQMLVSSNSSGLASTTAAVASPSSSLSG-----LS 1061

  Fly  1130 GGGGNYE----TVSSXELAKEDIKC 1150
            |.|.:|.    ||.:..:..:...|
  Fly  1062 GVGKSYSREIVTVRTPLMYSQQESC 1086

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
side-VNP_611765.2 V-set 42..153 CDD:462230 44/112 (39%)
Ig_3 178..243 CDD:464046 23/68 (34%)
Ig 274..359 CDD:472250 24/85 (28%)
Ig strand B 280..284 CDD:409353 0/3 (0%)
Ig strand C 294..298 CDD:409353 1/3 (33%)
Ig strand E 320..324 CDD:409353 2/3 (67%)
Ig strand F 334..345 CDD:409353 1/10 (10%)
Ig strand G 355..358 CDD:409353 1/2 (50%)
Ig 400..466 CDD:472250 30/67 (45%)
Ig strand B 403..407 CDD:409353 2/3 (67%)
Ig strand C 416..421 CDD:409353 1/4 (25%)
Ig strand E 438..442 CDD:409353 1/3 (33%)
Ig strand F 452..457 CDD:409353 2/4 (50%)
Ig strand G 465..468 CDD:409353 1/2 (50%)
FN3 719..798 CDD:214495 31/78 (40%)
side-VINP_001036705.1 IG_like 35..140 CDD:214653 44/111 (40%)
Ig_3 165..230 CDD:464046 23/68 (34%)
Ig 262..343 CDD:472250 26/102 (25%)
Ig strand B 266..270 CDD:409416 0/3 (0%)
Ig strand C 280..284 CDD:409416 1/3 (33%)
Ig strand F 320..325 CDD:409416 1/10 (10%)
Ig strand G 336..339 CDD:409416 1/2 (50%)
Ig_3 358..426 CDD:464046 28/67 (42%)
Ig_3 456..524 CDD:464046 31/212 (15%)
FN3 545..622 CDD:473895 29/76 (38%)

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