DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment side-V and fred

DIOPT Version :9

Sequence 1:NP_611765.2 Gene:side-V / 37679 FlyBaseID:FBgn0085400 Length:1174 Species:Drosophila melanogaster
Sequence 2:NP_608812.3 Gene:fred / 33613 FlyBaseID:FBgn0051774 Length:1447 Species:Drosophila melanogaster


Alignment Length:1377 Identity:259/1377 - (18%)
Similarity:427/1377 - (31%) Gaps:483/1377 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   119 LRIKNIQ-TSDAGLYKCRV-------DFHKSPTRNWRINVTVLVPPTALTILDHHGAEIRDQTAG 175
            |:|||.. ..|.|.::||:       |.|:.     ..|:|||..|        |...:......
  Fly    89 LQIKNTSYNRDNGRFECRIKAKGTGADVHQE-----FYNLTVLTAP--------HPPMVTPGNLA 140

  Fly   176 PYLEGDSIDLTCLSSGGVPPPRVSWWREHALI---------------------------DDSF-- 211
            ...|...::|||.|.||.|.|.::|:||.:.:                           ||..  
  Fly   141 VATEEKPLELTCSSIGGSPDPMITWYREGSTVPLQSYALKGGSKNHYTNATLQIVPRRADDGAKY 205

  Fly   212 ------QVLPDGSV-------------------RNVLRLK---------NIQRKDLLT------- 235
                  :.:|:|.:                   :|.|:::         .:..|.:::       
  Fly   206 KCVVWNRAMPEGHMLETSVTLNVNYYPRVEVGPQNPLKVERDHVAKLDCRVDAKPMVSNVRWSRN 270

  Fly   236 ---------------------MYTCQASNGHVVPALTKKVILDMNLPPLSLLLQGLNHAVIAGTR 279
                                 .|||.|.|| :.....|.::||:..||: :.::...|....|..
  Fly   271 GQYVSATPTHTIYRVNRHHAGKYTCSADNG-LGKTGEKDIVLDVLYPPI-VFIESKTHEAEEGET 333

  Fly   280 SHVTCTAIGARPPPEIIWSKAG-----------------------QIVRG-------ATSSTSSD 314
            ..:.|.......|..:.|.|.|                       .|.|.       ::......
  Fly   334 VLIRCNVTANPSPINVEWLKEGAPDFRYTGELLTLGSVRAEHAGNYICRSVNIMQPFSSKRVEGV 398

  Fly   315 GNTTISELM--------LIP----VPEDNERQVVCS----------------ISLNAGITSQQLH 351
            ||:|::.|:        :.|    |...|...:.||                :..:.|.|.:.|.
  Fly   399 GNSTVALLVRHRPGQAYITPNKPVVHVGNGVTLTCSANPPGWPVPQYRWFRDMDGDIGNTQKILA 463

  Fly   352 EG----------------HTTVMTTLGNGHTGLYLKDSRVLNVTHAPIVNLNLGAPLDPDNLLK- 399
            :|                |...:..||.|      |.:.::...|.|           |..|.| 
  Fly   464 QGPQYSIPKAHLGSEGKYHCHAVNELGIG------KIATIILEVHQP-----------PQFLAKL 511

  Fly   400 ---------GTDVYLECDVKANPAITRVEWYHSDKQLHSSR--------------GIIISNQTLV 441
                     ..|..:.|..|..|. .::.|.....::..:|              |::.....|.
  Fly   512 QQHMTRRVGDVDYAVTCSAKGKPT-PQIRWIKDGTEILPTRKMFDIRTTPTDAGGGVVAVQSILR 575

  Fly   442 LQGISK--------SSHGQYFCRASNLQGSVSSNEVYLDVKYPPVCKSESTIIRAALKQTINITC 498
            .:|.::        :..|.|.|...|...|.:|: ::|.:::.|:...:...:...|:::..:.|
  Fly   576 FRGKARPNGNQLLPNDRGLYTCLYENDVNSANSS-MHLRIEHEPIVIHQYNKVAYDLRESAEVVC 639

  Fly   499 EVDANPVDNLNYKWHFNNSLESLIELPQLGQGAPVMLASGSDQSGYYQRSKRKHSHGMQQRLLHG 563
            .|.|.|  ...::|.:.|:              |..|...||  |:|:.|.|..::.:...:|  
  Fly   640 RVQAYP--KPEFQWQYGNN--------------PSPLTMSSD--GHYEISTRMENNDVYTSIL-- 684

  Fly   564 RHGRMAAVRFEDEDEDGYGEFEEYGDEVGQPFTQMVYSNMVHKNHVESSKQQQRKQL--SPQQQQ 626
               |:|.::..|     |||:          ..:.|       |.::|.:...|.|.  ||::..
  Fly   685 ---RIAHLQHSD-----YGEY----------ICRAV-------NPLDSIRAPIRLQPKGSPEKPT 724

  Fly   627 QQQQMASGGSSGD-SHTPS-GGVILERKRLVALHKQHHRGGVATPPTTTAAPPLNNVY--SYHVE 687
            ..:.:..|.:... :.||. .|..:..|.||:..:      ||||...|.:....|.|  ||.:.
  Fly   725 NLKILEVGHNYAVLNWTPGFNGGFMSTKYLVSYRR------VATPREQTLSDCSGNGYIPSYQIS 783

  Fly   688 SYESFGAISCVASSPMGHSAPCW-----YHIQPADLPEPVKNCTAYNATANSLQIQCIPGYD--- 744
            |          :||...|.   |     :...|..| .|:....:|.....:|..:...||.   
  Fly   784 S----------SSSNSNHE---WIEFNCFKENPCKL-APLDQHQSYMFKVYALNSKGTSGYSNEI 834

  Fly   745 ------GGIPQHFHAQIYDELNRQIL--------------------YNASYKYSEF--TVKRLPS 781
                  ..||...|.. ||. |..:|                    .:|:....|.  |:..|||
  Fly   835 LATTKVSKIPPPLHVS-YDP-NSHVLGINVAATCLSLIAVVESLVTRDATVPMWEIVETLTLLPS 897

  Fly   782 DSVFVIRITAVN--AQGASKVAYRLRGRTLS---------------------APLLR-------- 815
            .|....:...:|  ::.|........||:|.                     .|::|        
  Fly   898 GSETTFKEAIINHVSRPAHYTTATTSGRSLGVGGGSHLGEDRTMALAETAGPGPVVRVKLCLRSN 962

  Fly   816 --------------------TASSTAVLVQLTPLLGALVGVIATLILVAICVV----IVIKFRSK 856
                                ::.:|:.||.:  ::.:|..|:...:|.|.|..    ...|..|.
  Fly   963 HEHCGAYANAEIGKSYMPHKSSMTTSALVAI--IIASLSFVVFLGLLYAFCHCRRKHAAKKESSS 1025

  Fly   857 RGGRRHGSGADATTTEADKGSAEPLSRNMGSHSSLEDKNPDVVPQEANSEDEFHQEEKAFDRLNM 921
            .||...|..|:||......|:.|            .|.:.|...:.:.|:|              
  Fly  1026 VGGGVGGGNANATANPGSTGAKE------------YDLDLDASRRPSLSQD-------------- 1064

  Fly   922 ESQRILYTPPTRINTASPPPPSLSPT-------FGKQYG--ELSLTT--NPAFSLYNTPQRAPAV 975
                     |.:.....||||...||       .|...|  ||:||.  :|...| |..|:....
  Fly  1065 ---------PQQSQQQPPPPPPYYPTGTLDSKDIGNGNGGMELTLTALHDPDEQL-NMQQQQHHS 1119

  Fly   976 QRPVYTAPPPLLSTRTPPNIYTRIPGRGGGGGGATVTAAGAGGYHLPAYETRTSPTSPYG--STT 1038
            ....|..|..:|      .||..:.|.||...|.....:...|||:         ||..|  |.:
  Fly  1120 NHGQYQQPKAIL------GIYGGVAGSGGNNSGGQHPHSNGYGYHV---------TSAIGVDSDS 1169

  Fly  1039 TCTMPLLGGQSNGSLQSGGVGGVGGLVGGGACNTL-PHPGSLHVGGISAALTSSVTSGNITIGAA 1102
            ...:|.:...:.||...|...|.|  :|.|....| ..|.:.::.|.|:: .|.:........|.
  Fly  1170 YQVLPSVANSAAGSHGHGSGHGHG--LGAGESGPLEATPPTCNISGGSSS-NSGINPMQQQHSAR 1231

  Fly  1103 QSLLTSP----RSQTATYSTTLGGVQSPLLMGGGGNYETVSSXELA---KEDIKCQIVCIGGSST 1160
            .:|...|    .|.|..|:..|.............|..|:.. .|.   :|..:||:.   .::.
  Fly  1232 ANLTNQPTIATASSTNNYNNHLNNTNIAHTTNNTNNCTTLKRGHLGNRERERERCQVT---AATA 1293

  Fly  1161 CTTSTLGAERTT 1172
            .||:.|....||
  Fly  1294 ATTTALATTITT 1305

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
side-VNP_611765.2 Ig 42..153 CDD:299845 12/41 (29%)
IG_like 42..152 CDD:214653 11/40 (28%)
IGc2 179..245 CDD:197706 24/156 (15%)
IG_like 179..245 CDD:214653 24/156 (15%)
Ig <282..348 CDD:299845 18/123 (15%)
IGc2 400..459 CDD:197706 12/80 (15%)
FN3 719..798 CDD:214495 20/111 (18%)
fredNP_608812.3 Ig 29..126 CDD:299845 12/41 (29%)
IG_like 141..228 CDD:214653 16/86 (19%)
Ig 147..228 CDD:299845 15/80 (19%)
I-set 232..313 CDD:254352 11/81 (14%)
IGc2 250..302 CDD:197706 7/52 (13%)
IG_like 323..385 CDD:214653 9/61 (15%)
IGc2 330..385 CDD:197706 8/54 (15%)
Ig_2 416..501 CDD:290606 14/90 (16%)
IG_like 418..501 CDD:214653 14/88 (16%)
I-set 505..612 CDD:254352 18/108 (17%)
Ig 526..611 CDD:143165 14/86 (16%)
IG_like 633..715 CDD:214653 25/126 (20%)
Ig 635..713 CDD:143165 24/122 (20%)
FN3 720..838 CDD:238020 29/137 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3515
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.810

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