DRSC/TRiP Functional Genomics Resources

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Protein Alignment side-V and igcm-1

DIOPT Version :10

Sequence 1:NP_611765.2 Gene:side-V / 37679 FlyBaseID:FBgn0085400 Length:1174 Species:Drosophila melanogaster
Sequence 2:NP_508166.1 Gene:igcm-1 / 180433 WormBaseID:WBGene00018215 Length:1073 Species:Caenorhabditis elegans


Alignment Length:912 Identity:177/912 - (19%)
Similarity:305/912 - (33%) Gaps:303/912 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    75 RQGN--------VKPIYTFDARGRPLNLGIPWA-------------DESVFNKKAHFHHDTDPP- 117
            ::||        |||.| ||.:...:|    ||             |:.:..|.:.|..:.|.. 
 Worm    39 QEGNEGIVIPCVVKPEY-FDRQKYEIN----WARYNNGQLRMITKNDKLLAKKHSRFILENDSAT 98

  Fly   118 ---ALRIKNIQ-TSDAGLYKCRV------DFHKSPTRNWRINVTVLVPPTALTILDHHGAEIRDQ 172
               :|||..:: .|..|.|.|.|      |...|..    ..|.|||||         |..|...
 Worm    99 GNYSLRITEVEKNSVEGTYHCNVIGTDDSDVQYSAL----ATVVVLVPP---------GDPIIST 150

  Fly   173 T-AGPYLEGDSIDLTCLSSGGVPPPRVSWW------REHALIDDSFQVLPDGSVRNVLRLKNIQR 230
            | :...:|||.:...|:|.||.|.|..:|.      ...|:....|:   ||:..::|..: :..
 Worm   151 TPSESVIEGDFMTAKCVSVGGSPQPTFTWTLPNDTIASSAIFTTQFR---DGATESLLHFR-VTS 211

  Fly   231 KDLLTMYTCQASNGHVVPALTKKV---ILDMNLPPLSLL--LQGLNH-AVIAGTRSHVTCTAIGA 289
            .|......|..:|..::...||:|   .|::...|:..:  .:.|.| :|..|...::||.:...
 Worm   212 SDDGKSVQCDVTNRAMLGGETKQVKSSQLNVLYKPVVFVTPTENLTHLSVEEGELVNLTCNSASN 276

  Fly   290 RPPPEIIWS--KAGQIVRGATSSTSSDGNTTISELMLIPVPEDNERQVVCSISLNAGITSQQLHE 352
            .|.....|.  .:|:..:|                .:.|:..|:        |::.....:..:|
 Worm   277 PPAHSYEWKHIASGERYQG----------------KIWPIRVDS--------SMSGDFECRSTNE 317

  Fly   353 GHTTVMTTLGNGHTGLYLKDSRVLNVTHAPIVNLNLGAPLDPDNLLKGTDVYLECDVKANPAITR 417
                    ||.|        :.||.:....|..:|:...:.|:.:   .|:.:.|:|.|.|.:..
 Worm   318 --------LGEG--------TAVLKMVVQHIPRINVPESISPNEM---EDIDILCEVSAVPEVID 363

  Fly   418 VEWYHSDKQLHSSRGIIISNQTLVLQGISKSSHGQYFCRASNL---------QGSVSSNEVYLDV 473
            ::|.       ...|...:...|.:..|||:..|.|.|.|:|.         |..:.:....:||
 Worm   364 IKWV-------GPNGFKQNGSRLTITSISKAQSGNYTCMATNFLTVYGHSGSQQRMGTGTTIVDV 421

  Fly   474 KYPPVCKSESTIIRAA----LKQTINITCEVD--ANPVDNLNYKW-------------HFNNSLE 519
            |..|   .::.|:.|.    :.:||.:.|:.:  .||  :.:|.|             |...|.|
 Worm   422 KRKP---GQAQIVSARQNVDVGETIKLMCQAEDAGNP--SASYTWASPSSGGIFGLEGHTEKSFE 481

  Fly   520 ------------SLIELPQLGQG--APVMLASGSDQSGYYQRSKRKHSHGMQQRLLHGRHGRMAA 570
                        |......||:|  ..||:.       ..::::.......::....|..|::..
 Worm   482 VRNAQLSDNGVYSCKAYNDLGEGKIGTVMIT-------VIEKARISSPLATERIFTSGEQGKILE 539

  Fly   571 VRFEDEDEDGYGEFEEYGDEV------GQPFTQMVYSNMVHKNHVESSKQQQRKQLSPQQQQQQQ 629
            .           |.:.|...|      |:|..|.:|:         ||...:.|.|  .:....|
 Worm   540 C-----------EAQGYPSPVIKWLKDGRPVKQSIYA---------SSATSESKCL--PEDFCTQ 582

  Fly   630 QMAS----------------------GGSSGDSHTPSGGVILERKRLVALHKQHHRGGVATPPTT 672
            .:||                      |....|..:.|..::....:.|.|:::.....:|.....
 Worm   583 TVASTLTLAGPLKWSDKGNFTCVADNGSDKTDKDSSSWTIVRVLHKPVFLNRKFPEKSLAAADIG 647

  Fly   673 TAA-----------PPL-----------NNVYSYHV-------ESYE-----------SFGAISC 697
            :.|           |..           |..:|:|.       :.||           .:|...|
 Worm   648 SQAIIRCKVSARPEPEFHWMFRDSEISENERHSFHTVGITGKPDEYEQLLQIESVQESDYGEYVC 712

  Fly   698 VASSPMGHSAPCWYHI-------QPADLPEPVKNCTAYNATANSLQIQCIPGYDGGIPQHF--HA 753
            .|::..|..     |:       .|..||..::.   .:||:||:.:..:|.:|||..|.:  ..
 Worm   713 RATNGNGGD-----HVVIELRKTSPPALPLDLQK---LSATSNSVLLGWVPQFDGGADQTYVLET 769

  Fly   754 QIYDELNRQILYNASYKYSEFTVKRLPSD---------------------SVFVIRITAVNAQGA 797
            :..|....:|..||  ..|:..:..:..|                     |.:.:||.||:.:|.
 Worm   770 RKIDPFTGEIDGNA--PVSKLNINAVQQDQEIDGTLVSKNIFNFTGLTPLSTYNLRIQAVSEKGE 832

  Fly   798 SK 799
            |:
 Worm   833 SE 834

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
side-VNP_611765.2 V-set 42..153 CDD:462230 26/109 (24%)
Ig_3 178..243 CDD:464046 17/70 (24%)
Ig 274..359 CDD:472250 12/86 (14%)
Ig strand B 280..284 CDD:409353 0/3 (0%)
Ig strand C 294..298 CDD:409353 0/3 (0%)
Ig strand E 320..324 CDD:409353 0/3 (0%)
Ig strand F 334..345 CDD:409353 1/10 (10%)
Ig strand G 355..358 CDD:409353 0/2 (0%)
Ig 400..466 CDD:472250 17/74 (23%)
Ig strand B 403..407 CDD:409353 0/3 (0%)
Ig strand C 416..421 CDD:409353 0/4 (0%)
Ig strand E 438..442 CDD:409353 1/3 (33%)
Ig strand F 452..457 CDD:409353 2/4 (50%)
Ig strand G 465..468 CDD:409353 0/2 (0%)
FN3 719..798 CDD:214495 22/101 (22%)
igcm-1NP_508166.1 Ig 140..235 CDD:472250 27/107 (25%)
Ig strand B 162..166 CDD:409418 0/3 (0%)
Ig strand C 176..181 CDD:409418 1/4 (25%)
Ig strand E 203..207 CDD:409418 1/3 (33%)
Ig strand F 217..222 CDD:409418 1/4 (25%)
Ig strand G 231..234 CDD:409418 1/2 (50%)
Ig_3 245..316 CDD:464046 14/94 (15%)
Ig_3 333..398 CDD:464046 17/74 (23%)
IG_like 437..513 CDD:214653 16/84 (19%)
Ig strand B 443..447 CDD:409353 1/3 (33%)
Ig strand C 458..461 CDD:409353 1/2 (50%)
Ig strand E 478..482 CDD:409353 1/3 (33%)
Ig strand F 492..497 CDD:409353 1/4 (25%)
Ig 538..617 CDD:409353 16/100 (16%)
Ig strand C 549..553 CDD:409353 1/3 (33%)
Ig strand E 586..590 CDD:409353 1/3 (33%)
Ig strand F 601..606 CDD:409353 0/4 (0%)
Ig 642..727 CDD:472250 13/89 (15%)
Ig strand B 650..654 CDD:409353 1/3 (33%)
Ig strand C 663..667 CDD:409353 0/3 (0%)
Ig strand E 688..699 CDD:409353 2/10 (20%)
Ig strand F 709..714 CDD:409353 1/4 (25%)
FN3 733..843 CDD:238020 24/107 (22%)

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