DRSC/TRiP Functional Genomics Resources

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Protein Alignment RpL37b and Kcna6

DIOPT Version :9

Sequence 1:NP_611757.1 Gene:RpL37b / 37669 FlyBaseID:FBgn0034822 Length:89 Species:Drosophila melanogaster
Sequence 2:NP_038596.1 Gene:Kcna6 / 16494 MGIID:96663 Length:529 Species:Mus musculus


Alignment Length:103 Identity:20/103 - (19%)
Similarity:31/103 - (30%) Gaps:29/103 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MTKGTTSFGKRHNKT------HTICRRCG---------------NSSYHLQKSKCSQ-------C 37
            :|..|..:|..:..|      .::|...|               |..||.:..:..|       |
Mouse   418 VTMTTVGYGDMYPMTVGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETEQEEQGQYTHVTC 482

  Fly    38 GYPAAKTRSF-NWSRKAKGRKAQGTGRMRYLKNLRRRF 74
            |.|....::. |...|....:|....|..||....|.:
Mouse   483 GQPTPDLKATDNGLGKPDFAEASRERRPSYLPTPHRAY 520

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpL37bNP_611757.1 PTZ00073 1..89 CDD:240257 20/103 (19%)
Kcna6NP_038596.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..35
BTB_POZ_KCNA6 41..170 CDD:349714
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 203..238
Ion_trans 258..468 CDD:366146 9/49 (18%)
S4-S5 linker. /evidence=ECO:0000250|UniProtKB:P63142 360..373
Selectivity filter. /evidence=ECO:0000250|UniProtKB:P63142 422..427 1/4 (25%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 488..513 4/24 (17%)
PDZ-binding. /evidence=ECO:0000255 527..529
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2126
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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