DRSC/TRiP Functional Genomics Resources

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Protein Alignment RpL37b and Kcnd1

DIOPT Version :9

Sequence 1:NP_611757.1 Gene:RpL37b / 37669 FlyBaseID:FBgn0034822 Length:89 Species:Drosophila melanogaster
Sequence 2:NP_001099218.1 Gene:Kcnd1 / 116695 RGDID:621364 Length:650 Species:Rattus norvegicus


Alignment Length:87 Identity:22/87 - (25%)
Similarity:35/87 - (40%) Gaps:15/87 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 GTTSFGKRHNKTHTICRR-CGNSSYHLQKSKCSQCGYPAAKTRSFNWSRKAKGRKAQGTGRMRYL 67
            |..|.|.|.:::.::..: .|..|  |..|.||:.|...|       .|.|....:...|.|:.|
  Rat   504 GAVSLGGRTSRSTSVSSQPMGPGS--LFSSCCSRRGERRA-------IRLANSTASVSRGSMQEL 559

  Fly    68 KNLRRRFRNGLREGGAAKKKTN 89
            ..|.     |||...|.:.:::
  Rat   560 DTLA-----GLRRSPAPQSRSS 576

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpL37bNP_611757.1 PTZ00073 1..89 CDD:240257 22/85 (26%)
Kcnd1NP_001099218.1 BTB_POZ 6..143 CDD:365784
Ion_trans 185..417 CDD:395416
DUF3399 447..550 CDD:403174 14/54 (26%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2126
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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