DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG9876 and PHOX2B

DIOPT Version :10

Sequence 1:NP_611756.1 Gene:CG9876 / 37668 FlyBaseID:FBgn0034821 Length:275 Species:Drosophila melanogaster
Sequence 2:NP_003915.2 Gene:PHOX2B / 8929 HGNCID:9143 Length:314 Species:Homo sapiens


Alignment Length:215 Identity:77/215 - (35%)
Similarity:91/215 - (42%) Gaps:76/215 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    82 LSSNFGPTGAGCGGADRPAPCS-GNL-----------------PAGGGHHSRKPRRNRTTFSSAQ 128
            :.:.||.| :||... .|..|| |.|                 ..||.:..||.||.||||:|||
Human    47 IRTTFGAT-SGCPSL-TPGSCSLGTLRDHQSSPYAAVPYKLFTDHGGLNEKRKQRRIRTTFTSAQ 109

  Fly   129 LTALEKVFERTHYPDAFVREELATKVHLSEARVQVWFQNRRAKFRRNERSVG------------- 180
            |..||:||..|||||.:.|||||.|:.|:||||||||||||||||:.||:..             
Human   110 LKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQERAAAAAAAAAKNGSSGK 174

  Fly   181 ---------SRTLLDTAPQLVPAPISNNMHKYANMPHPHPQPPPPPGAYALNFGPLELRSCQNYT 236
                     |:....|.|.....            |.|:|.|.|..||                 
Human   175 KSDSSRDDESKEAKSTDPDSTGG------------PGPNPNPTPSCGA----------------- 210

  Fly   237 NCYGGFGSS-----GASGSG 251
            |..||.|.|     ||:|.|
Human   211 NGGGGGGPSPAGAPGAAGPG 230

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG9876NP_611756.1 Homeodomain 118..174 CDD:459649 41/55 (75%)
PHOX2BNP_003915.2 Homeodomain 99..155 CDD:459649 41/55 (75%)
polyalanine repeat 241..260
Blue background indicates that the domain is not in the aligned region.

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