DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG9876 and RLT2

DIOPT Version :10

Sequence 1:NP_611756.1 Gene:CG9876 / 37668 FlyBaseID:FBgn0034821 Length:275 Species:Drosophila melanogaster
Sequence 2:NP_199231.1 Gene:RLT2 / 834441 AraportID:AT5G44180 Length:1694 Species:Arabidopsis thaliana


Alignment Length:163 Identity:45/163 - (27%)
Similarity:69/163 - (42%) Gaps:45/163 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    94 GGADRPAPCSGNLPAGGGHHSRKPRRNRTTFSSAQLTALEKVFERTHYPDAFVREELATKVHLSE 158
            ||:::      ..|.|.|..|:..|:.:|   :|||..||..:....||...:|.:|:.|::||:
plant     3 GGSEK------TTPEGCGGESKSKRKMKT---AAQLEVLENTYSAEPYPSEAIRADLSVKLNLSD 58

  Fly   159 ARVQVWFQNRRAKFRRNERSVGSRTLLDTAPQLVPAPISNNMHKYANMPHPHPQPPPPPGAYALN 223
            .::|:||.:||.|.|::           |.|       |....|....|.......||     :|
plant    59 RQLQMWFCHRRLKERKS-----------TTP-------SKRQRKELVTPTAMESWEPP-----VN 100

  Fly   224 FGPL----ELRSCQNYTNCYGGFGSSGASGSGV 252
            .|.|    ||.|.:         .:.|:.||||
plant   101 AGDLVAGNELDSRR---------AARGSGGSGV 124

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG9876NP_611756.1 Homeodomain 118..174 CDD:459649 20/55 (36%)
RLT2NP_199231.1 Homeodomain 18..74 CDD:459649 20/58 (34%)
DUF5401 <322..>457 CDD:375164
DDT 515..570 CDD:460696
HARE-HTH 696..765 CDD:461541
WHIM1 899..941 CDD:464774
WSD 1071..1145 CDD:464775
Blue background indicates that the domain is not in the aligned region.

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