Protein Alignment CG9876 and Vsx1

DIOPT Version :10

• Sequence 1: NP_611756.1
• Gene: CG9876 / 37668
• FlyBaseID: FBgn0034821
• Length: 275
• Species: Drosophila melanogaster
• Sequence 2: NP_001103016.1
• Gene: Vsx1 / 689704
• RGDID: 1305667
• Length: 369
• Species: Rattus norvegicus
• Alignment Length: 120
• Identity: 46/120 - (38%)
• Similarity: 58/120 - (48%)
• Gaps: 21/120 - (17%)

  Fly    87 GPTGAGCGGADRPAPCSG------NLPAGGGHH---------------SRKPRRNRTTFSSAQLT 130
            ||..|.......|.|..|      |:....|..               .||.||:||.|::.||.
  Rat   117 GPEPAVAQSPVHPPPALGSQQRSENISTSDGDSPSEEKNDPKMSLTLGKRKKRRHRTVFTAHQLE 181

  Fly   131 ALEKVFERTHYPDAFVREELATKVHLSEARVQVWFQNRRAKFRRNERSVGSRTLL 185
            .|||.|...||||.:.||.||.|..|.|.|:||||||||||:|:.|:..|..:::
  Rat   182 ELEKAFGEAHYPDVYAREMLAVKTELPEDRIQVWFQNRRAKWRKREKRWGGSSVM 236

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
CG9876	NP_611756.1	Homeodomain	118..174	CDD:459649	33/55 (60%)
Vsx1	NP_001103016.1	Homeodomain	169..225	CDD:459649	33/55 (60%)