Protein Alignment CG9876 and Hoxa6

DIOPT Version :10

• Sequence 1: NP_611756.1
• Gene: CG9876 / 37668
• FlyBaseID: FBgn0034821
• Length: 275
• Species: Drosophila melanogaster
• Sequence 2: NP_001178016.1
• Gene: Hoxa6 / 685732
• RGDID: 1590236
• Length: 233
• Species: Rattus norvegicus
• Alignment Length: 184
• Identity: 50/184 - (27%)
• Similarity: 80/184 - (43%)
• Gaps: 27/184 - (14%)

  Fly     4 YQQQLHSLPVGNPGNFYYGPTVSGEIYSSHQSHNLESEDKLEDREESGRNL-----DKIHRFSVD 63
            :.||.:|:...|..::.||.:.            ..|:..|.....||.:.     |.:| ||.:
  Rat    57 FYQQSNSVLACNRASYEYGASC------------FYSDKDLSGASPSGNSKQRGPGDYLH-FSPE 108

  Fly    64 NIMEMKHDAYS-KGKMAMELSSNFGPTGAGCGGADRPAPCSGNLPAGGGHHSRKPRRNRTTFSSA 127
              .:.|.|:.| :||...|..::...|........|...|:|   |..|.|.   ||.|.|::..
  Rat   109 --QQYKPDSSSVQGKALHEEGTDRKYTSPVYPWMQRMNSCAG---AVYGSHG---RRGRQTYTRY 165

  Fly   128 QLTALEKVFERTHYPDAFVREELATKVHLSEARVQVWFQNRRAKFRRNERSVGS 181
            |...|||.|....|.....|.|:|..:.|:|.::::||||||.|:::..:.:.|
  Rat   166 QTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKENKLINS 219

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
CG9876	NP_611756.1	Homeodomain	118..174	CDD:459649	22/55 (40%)
Hoxa6	NP_001178016.1	Homeodomain	156..212	CDD:459649	22/55 (40%)