DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG9876 and SHOX2

DIOPT Version :10

Sequence 1:NP_611756.1 Gene:CG9876 / 37668 FlyBaseID:FBgn0034821 Length:275 Species:Drosophila melanogaster
Sequence 2:NP_003021.3 Gene:SHOX2 / 6474 HGNCID:10854 Length:355 Species:Homo sapiens


Alignment Length:232 Identity:63/232 - (27%)
Similarity:78/232 - (33%) Gaps:111/232 - (47%)


- Green bases have known domain annotations that are detailed below.


  Fly    87 GPTGAGCGGADRPAPCSGNLPAGGGHHSRKP---------------------------------- 117
            |..|.|.||...|.   ..|..|....||:|                                  
Human    81 GGAGGGAGGGRSPV---RELDMGAAERSREPGSPRLTEGRRKPTKAEVQATLLLPGEAFRFLVSP 142

  Fly   118 ----------------------RRNRTTFSSAQLTALEKVFERTHYPDAFVREELATKVHLSEAR 160
                                  ||:||.|:..||..||::|:.|||||||:||||:.::.|||||
Human   143 ELKDRKEDAKGMEDEGQTKIKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEAR 207

  Fly   161 VQVWFQNRRAKFRRNERSVGSRTLLDTAPQLVPAPISNNMHKYAN-----MP------------- 207
            |||||||||||.|:.|..:....|:..|.|.....::    .|.|     ||             
Human   208 VQVWFQNRRAKCRKQENQLHKGVLIGAASQFEACRVA----PYVNVGALRMPFQQDSHCNVTPLS 268

  Fly   208 --------------------HPH----------PQPP 214
                                |||          |.||
Human   269 FQVQAQLQLDSAVAHAHHHLHPHLAAHAPYMMFPAPP 305

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG9876NP_611756.1 Homeodomain 118..174 CDD:459649 37/55 (67%)
SHOX2NP_003021.3 Homeodomain 165..221 CDD:459649 37/55 (67%)
OAR 335..351 CDD:461067
Blue background indicates that the domain is not in the aligned region.

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