DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG9876 and pitx2

DIOPT Version :10

Sequence 1:NP_611756.1 Gene:CG9876 / 37668 FlyBaseID:FBgn0034821 Length:275 Species:Drosophila melanogaster
Sequence 2:NP_001017227.1 Gene:pitx2 / 549981 XenbaseID:XB-GENE-482492 Length:345 Species:Xenopus tropicalis


Alignment Length:284 Identity:63/284 - (22%)
Similarity:100/284 - (35%) Gaps:84/284 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    31 SSHQSHNLESEDKLEDREESGRNLDKIHRFSVDNIMEMKHDAYSKGKMAMELSSNFGPTGAGCGG 95
            |||..|:.:...:.:...:...:             :.......:....:.::|:.|.....|..
 Frog    22 SSHHQHHHQQHQQHQHHHQQHHH-------------QQHQQPQPQAVTLVSMASSLGQRSGECKA 73

  Fly    96 -------ADRPAPCSGNLPAGGGHHS-------------RKPRRNRTTFSSAQLTALEKVFERTH 140
                   :|..:|.:.:  ....|.|             ::.||.||.|:|.||..||..|:|..
 Frog    74 RLEVHTISDTSSPEAAD--KDKSHQSKNEDSSTDDPSKKKRQRRQRTHFTSQQLQELEATFQRNR 136

  Fly   141 YPDAFVREELATKVHLSEARVQVWFQNRRAKFRRNERSVGSRTLLD------------------- 186
            |||...|||:|...:|:||||:|||:|||||:|:.||:..:....:                   
 Frog   137 YPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKRERNQQAELCKNGFGPQFNGLMQPYDDMYPS 201

  Fly   187 ------TAPQLVPAPISNNMHKYANMPHPHPQPPPPPGAYALNFGPLELRSCQNYTNCYGGFGSS 245
                  .|..|..|.:|.....:.|               ::|..||..:|..:..|.......|
 Frog   202 YSYNNWAAKGLTSASLSTKSFPFFN---------------SMNVNPLSSQSMFSSPNSISSMSMS 251

  Fly   246 ---------GASGSGVCSFFGATN 260
                     |..|||:.|.....|
 Frog   252 SGMVPSAVTGVPGSGLNSLNNLNN 275

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG9876NP_611756.1 Homeodomain 118..174 CDD:459649 32/55 (58%)
pitx2NP_001017227.1 Homeodomain 114..170 CDD:459649 32/55 (58%)
OAR 303..320 CDD:461067
Blue background indicates that the domain is not in the aligned region.

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