DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG9876 and Pax7

DIOPT Version :10

Sequence 1:NP_611756.1 Gene:CG9876 / 37668 FlyBaseID:FBgn0034821 Length:275 Species:Drosophila melanogaster
Sequence 2:XP_006239325.1 Gene:Pax7 / 500574 RGDID:1564360 Length:505 Species:Rattus norvegicus


Alignment Length:238 Identity:70/238 - (29%)
Similarity:103/238 - (43%) Gaps:69/238 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    39 ESEDKLEDREESGRNLDKIHRFSVDNIMEMKHDAYSKGKMAMELSSNFGPTGAGCGGADRPAPCS 103
            |.:::.:.:||.|   :|..:.|:|.|:..|.:...:|.   ::.|                  .
  Rat   168 EDDEEGDKKEEDG---EKKAKHSIDGILGDKGNRLDEGS---DVES------------------E 208

  Fly   104 GNLPAGGGHHSRKPRRNRTTFSSAQLTALEKVFERTHYPDAFVREELATKVHLSEARVQVWFQNR 168
            .:||.     .||.||:||||::.||..|||.||||||||.:.|||||.:..|:||||||||.||
  Rat   209 PDLPL-----KRKQRRSRTTFTAEQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNR 268

  Fly   169 RAKFRRNERSVGSRTLL------------DTAPQLVPAPISNNMHKYANMPHP------HPQPPP 215
            ||::|   :..|:..|.            ...|.|.|..:.::.:....:...      .|||.|
  Rat   269 RARWR---KQAGANQLAAFNHLLPGGFPPTGMPTLPPYQLPDSAYPTTTVSQDGGSTVHRPQPLP 330

  Fly   216 PPGAYALNFGPLELRSCQNYTNCYGGFGSSGASGSGVCSFFGA 258
            |.                  |...||..::.|:... .|.:||
  Rat   331 PS------------------TMHQGGLAAAAAAADS-SSAYGA 354

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG9876NP_611756.1 Homeodomain 118..174 CDD:459649 37/55 (67%)
Pax7XP_006239325.1 PAX 34..161 CDD:128645
Homeodomain 218..274 CDD:459649 38/58 (66%)
Pax7 <354..385 CDD:403540 1/1 (100%)
Blue background indicates that the domain is not in the aligned region.

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