DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG9876 and Dlx6

DIOPT Version :10

Sequence 1:NP_611756.1 Gene:CG9876 / 37668 FlyBaseID:FBgn0034821 Length:275 Species:Drosophila melanogaster
Sequence 2:NP_001414318.1 Gene:Dlx6 / 500023 RGDID:1561539 Length:298 Species:Rattus norvegicus


Alignment Length:229 Identity:56/229 - (24%)
Similarity:85/229 - (37%) Gaps:62/229 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 NYQQQLHSLP-VGNPGNFYYGPTVSGEIYSSHQSHNLESEDKLEDREESGRNLDKIHRFSV---- 62
            ::|...|..| ....||.|...:::...|.||..|:              ..|...|..|.    
  Rat    95 HHQHHHHGSPYASGGGNSYNHRSLAAYPYMSHSQHS--------------PYLQSYHNSSAAAQT 145

  Fly    63 --DNIMEMKHDAYSKGKMAMELSSNFGPTGAGCGGADRPAPCSGNLPAGGGHHSRKPRRNRTTFS 125
              |:..:.|......|::...                           |.|...|||   ||.:|
  Rat   146 RGDDTDQQKTTVIENGEIRFN---------------------------GKGKKIRKP---RTIYS 180

  Fly   126 SAQLTALEKVFERTHYPDAFVREELATKVHLSEARVQVWFQNRRAKFRR----------NERSVG 180
            |.||.||...|::|.|.....|.|||..:.|::.:|::||||:|:||::          ::...|
  Rat   181 SLQLQALNHRFQQTQYLALPERAELAASLGLTQTQVKIWFQNKRSKFKKLLKQGSNPHESDPLPG 245

  Fly   181 SRTLLDTAPQLVPAPISNNMHKYANMPHPHPQPP 214
            |..|...:|.|.|....:...|..:|| |:...|
  Rat   246 SAALSPRSPALPPVWDVSASAKGVSMP-PNSYMP 278

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG9876NP_611756.1 Homeodomain 118..174 CDD:459649 24/55 (44%)
Dlx6NP_001414318.1 None

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