DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG9876 and Hoxb6

DIOPT Version :10

Sequence 1:NP_611756.1 Gene:CG9876 / 37668 FlyBaseID:FBgn0034821 Length:275 Species:Drosophila melanogaster
Sequence 2:NP_001385781.1 Gene:Hoxb6 / 497986 RGDID:1562142 Length:224 Species:Rattus norvegicus


Alignment Length:112 Identity:31/112 - (27%)
Similarity:49/112 - (43%) Gaps:27/112 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    83 SSNFGPTGAGCGGADRPAPCSGNLPAGGGHHSRKPRRNRTTFSSAQLTALEKVFERTHYPDAFVR 147
            ||:|||:|                           ||.|.|::..|...|||.|....|.....|
  Rat   139 SSSFGPSG---------------------------RRGRQTYTRYQTLELEKEFHYNRYLTRRRR 176

  Fly   148 EELATKVHLSEARVQVWFQNRRAKFRRNERSVGSRTLLDTAPQLVPA 194
            .|:|..:.|:|.::::||||||.|:::..:.:.:..|.....:..||
  Rat   177 IEIAHALCLTERQIKIWFQNRRMKWKKESKLLSASQLSAEEEEEKPA 223

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG9876NP_611756.1 Homeodomain 118..174 CDD:459649 22/55 (40%)
Hoxb6NP_001385781.1 Homeodomain 147..203 CDD:459649 22/55 (40%)

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