DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG9876 and sv

DIOPT Version :10

Sequence 1:NP_611756.1 Gene:CG9876 / 37668 FlyBaseID:FBgn0034821 Length:275 Species:Drosophila melanogaster
Sequence 2:NP_524633.3 Gene:sv / 43825 FlyBaseID:FBgn0005561 Length:844 Species:Drosophila melanogaster


Alignment Length:137 Identity:25/137 - (18%)
Similarity:49/137 - (35%) Gaps:43/137 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MLNYQQQLHSLPVGNPGNFYYGPTVSGEIYSSHQSH--------NLESEDKLEDREESGRNLDKI 57
            :.::|||..|..:.|..|...|.::|..|.::...|        |:.:..::||:.::.      
  Fly    58 LTHHQQQDVSPTLHNLQNTRTGDSLSTTINTNQNQHGHQHLSGSNMYTSSQMEDKSKAN------ 116

  Fly    58 HRFSVDNIMEMKHDAYSKGKMAMELSSNFGPTGAGC-----------------GGADRPAPCSGN 105
                       |:|.||...::....:|..|:....                 .||:......|:
  Fly   117 -----------KYDEYSSRTLSNISDANTTPSANNFITQSQGIEWITAMNDIQNGAEDSHSSQGS 170

  Fly   106 LPAGGGH 112
            : :|.||
  Fly   171 I-SGDGH 176

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG9876NP_611756.1 Homeodomain 118..174 CDD:459649
svNP_524633.3 PAX 175..299 CDD:128645 2/2 (100%)
Blue background indicates that the domain is not in the aligned region.

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