DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG9876 and shox2

DIOPT Version :10

Sequence 1:NP_611756.1 Gene:CG9876 / 37668 FlyBaseID:FBgn0034821 Length:275 Species:Drosophila melanogaster
Sequence 2:NP_957490.1 Gene:shox2 / 394171 ZFINID:ZDB-GENE-040426-1457 Length:299 Species:Danio rerio


Alignment Length:200 Identity:69/200 - (34%)
Similarity:93/200 - (46%) Gaps:28/200 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    28 EIYSSHQSHNLESEDKLEDREESGRNLDKIHRFSVDNIMEMKHDAYSKGKMAMELSSNFGPTGAG 92
            |:..:....|.||.....:|||    :..|.|..|.:....:.|     .:|.|.|.:.......
Zfish    27 EVLETGSVRNRESLSADPNREE----ISSITRSGVRSSPVREAD-----MLASERSRDSSSPKLT 82

  Fly    93 CGGAD---RPAPCSGNLPAGGGHHSR-KPRRNRTTFSSAQLTALEKVFERTHYPDAFVREELATK 153
            .|..|   |...|.   |......:: |.||:||.|:..||..||::|:.|||||||:||||:.:
Zfish    83 DGNTDMKERKEDCK---PLEDETQTKIKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQR 144

  Fly   154 VHLSEARVQVWFQNRRAKFRRNERSVGSRTLLDTAPQLVPAPISNNMHKYAN-----MP---HPH 210
            :.||||||||||||||||.|:.|..:....|:..|.|.....::    .|.|     ||   ..|
Zfish   145 LGLSEARVQVWFQNRRAKCRKQENQLHKGVLIGAASQFEACRVA----PYVNVGALRMPFQQDSH 205

  Fly   211 PQPPP 215
            ...||
Zfish   206 CNVPP 210

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG9876NP_611756.1 Homeodomain 118..174 CDD:459649 37/55 (67%)
shox2NP_957490.1 Homeodomain 109..165 CDD:459649 37/55 (67%)
OAR 278..295 CDD:461067
Blue background indicates that the domain is not in the aligned region.

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