Protein Alignment CG9876 and Rx

DIOPT Version :10

• Sequence 1: NP_611756.1
• Gene: CG9876 / 37668
• FlyBaseID: FBgn0034821
• Length: 275
• Species: Drosophila melanogaster
• Sequence 2: NP_726006.3
• Gene: Rx / 37367
• FlyBaseID: FBgn0020617
• Length: 904
• Species: Drosophila melanogaster
• Alignment Length: 295
• Identity: 87/295 - (29%)
• Similarity: 117/295 - (39%)
• Gaps: 105/295 - (35%)

  Fly    11 LPVGNPGNFYYG--PTVSGEIYSSHQSHNLESEDKLEDREESGRNLDKIHRFSVDNIMEMKHDAY 73
            ||.||     ||  |....|::...|||:.:.:   :.:::..:.|.:...|        :||..
  Fly   443 LPGGN-----YGIRPRSMEEVHHQQQSHHHQQQ---QQQQQQQQQLQQQQGF--------QHDFR 491

  Fly    74 SKGKMAMELSSNFGPTGAGCGGADRPAPCSGN------------------LPAGGGHH------- 113
            :.|......:||.|..|... .||..:..:|:                  :.:|....
  Fly   492 NSGNGNPNGNSNSGDHGERL-NADSDSLVNGSCASSEDLNQTNSSEQGEKITSGSDDEGQDDNCA 555

  Fly   114 SRKPRRNRTTFSSAQLTALEKVFERTHYPDAFVREELATKVHLSEARVQVWFQNRRAKFRRNERS 178
            .:|.|||||||::.||..||:.||::||||.:.|||||.||:|.|.||||||||||||:||.|:|
  Fly   556 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQVWFQNRRAKWRRQEKS 620

  Fly   179 VGSR----------------------------TLLDTAP------------QLVP----APISNN 199
            ...|                            .||...|            .|.|    ||.:..
  Fly   621 ESLRLGLTHFTQLPHRLGCGASGLPVDPWLSPPLLSALPGFLSHPQTVYPSYLTPPLSLAPGNLT 685

  Fly   200 MHKYANMPHPH-----------------PQPPPPP 217
            |...|.|.|.|                 |||||||
  Fly   686 MSSLAAMGHHHAHNGPPPPHVGHGGHGQPQPPPPP 720

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
CG9876	NP_611756.1	Homeodomain	118..174	CDD:459649	38/55 (69%)
Rx	NP_726006.3	Homeodomain	560..616	CDD:459649	38/55 (69%)
		OAR	876..892	CDD:461067