Protein Alignment CG9876 and prd

DIOPT Version :10

• Sequence 1: NP_611756.1
• Gene: CG9876 / 37668
• FlyBaseID: FBgn0034821
• Length: 275
• Species: Drosophila melanogaster
• Sequence 2: NP_723721.1
• Gene: prd / 34629
• FlyBaseID: FBgn0003145
• Length: 613
• Species: Drosophila melanogaster
• Alignment Length: 279
• Identity: 87/279 - (31%)
• Similarity: 121/279 - (43%)
• Gaps: 61/279 - (21%)

  Fly     1 MLNYQQQLHSLPVGNPGNFYYGPTVSGEIYSSHQSHNLESEDKLEDREESGRNL------DKIHR 59
            :||..|:..|:   .||      .:.|   |..:....|.|:::|:.:.|...:      :|:.|
  Fly    79 ILNRYQETGSI---RPG------VIGG---SKPRIATPEIENRIEEYKRSSPGMFSWEIREKLIR 131

  Fly    60 FSV-DNIMEMKHDAYS---KGKMA---MELSSNFG-PTGAGCGGADRPAPCSGNLPAGGGHHS-- 114
            ..| |........|.|   :|:.|   .::||..| |.|   .|....:.|..::  .||||:
  Fly   132 EGVCDRSTAPSVSAISRLVRGRDAPLDNDMSSASGSPAG---DGTKASSSCGSDV--SGGHHNNG 191

  Fly   115 -------------------RKPRRNRTTFSSAQLTALEKVFERTHYPDAFVREELATKVHLSEAR 160
                               ||.||.|||||::||..||:.||||.|||.:.|||||.:.:|:|||
  Fly   192 KPSDEDISDCESEPGIALKRKQRRCRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEAR 256

  Fly   161 VQVWFQNRRAKFRRNERSVGSRTLLDTAPQLVPAPISNNMHKYANMPHPHPQPPPPPGAYALNFG 225
            :||||.||||:.|:...||..     .||....|.:|   |..|:...|......|..| .|...
  Fly   257 IQVWFSNRRARLRKQHTSVSG-----GAPGGAAASVS---HVAASSSLPSVVSSVPSMA-PLAMM 312

  Fly   226 PLELRSCQNYTNCYGGFGS 244
            |..|.....|...|..:||
  Fly   313 PGSLDPATVYQQQYDFYGS 331

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
CG9876	NP_611756.1	Homeodomain	118..174	CDD:459649	35/55 (64%)
prd	NP_723721.1	PAX	27..154	CDD:238076	19/86 (22%)
		Homeodomain	214..270	CDD:459649	35/55 (64%)