DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG9876 and HOXC4

DIOPT Version :10

Sequence 1:NP_611756.1 Gene:CG9876 / 37668 FlyBaseID:FBgn0034821 Length:275 Species:Drosophila melanogaster
Sequence 2:NP_055435.2 Gene:HOXC4 / 3221 HGNCID:5126 Length:264 Species:Homo sapiens


Alignment Length:232 Identity:53/232 - (22%)
Similarity:86/232 - (37%) Gaps:61/232 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 QQQLHSLPVGNPGNFY-YGPTVSGEIYSSHQSHNLESEDKLEDREESGRNLDKIHRFSVDNIMEM 68
            ::|.....:..|||.. :||..:|      ..|..:|:...|....||                 
Human    64 ERQYSCTSLQGPGNSRGHGPAQAG------HHHPEKSQSLCEPAPLSG----------------- 105

  Fly    69 KHDAYSKGKMAMELSSNFGPTGAGCG--GADRPAPCSGNLP-------------AGGGHHSRKPR 118
                         .|::..|....|.  ..|.|:..:...|             ....::..:|:
Human   106 -------------ASASPSPAPPACSQPAPDHPSSAASKQPIVYPWMKKIHVSTVNPNYNGGEPK 157

  Fly   119 RNRTTFSSAQLTALEKVFERTHYPDAFVREELATKVHLSEARVQVWFQNRRAKFRRNERSVGSRT 183
            |:||.::..|:..|||.|....|.....|.|:|..:.|||.::::||||||.|::::.|.  ..|
Human   158 RSRTAYTRQQVLELEKEFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRL--PNT 220

  Fly   184 LLDTAPQLVPAPISNNMHKYANMP---HPHPQPPPPP 217
            .:.:||....||.:.:    |..|   ..|.|...||
Human   221 KVRSAPPAGAAPSTLS----AATPGTSEDHSQSATPP 253

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG9876NP_611756.1 Homeodomain 118..174 CDD:459649 22/55 (40%)
HOXC4NP_055435.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 19..130 17/101 (17%)
Antp-type hexapeptide 135..140 0/4 (0%)
Homeodomain 157..213 CDD:459649 22/55 (40%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 214..264 12/46 (26%)

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