DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG9876 and Hoxc5

DIOPT Version :10

Sequence 1:NP_611756.1 Gene:CG9876 / 37668 FlyBaseID:FBgn0034821 Length:275 Species:Drosophila melanogaster
Sequence 2:NP_001101586.1 Gene:Hoxc5 / 315341 RGDID:1307584 Length:222 Species:Rattus norvegicus


Alignment Length:227 Identity:48/227 - (21%)
Similarity:81/227 - (35%) Gaps:57/227 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 NYQQQLHSLPV------GNPGN--------FYYG----------PTVSGEIYSSHQSHNLESEDK 43
            ::.:|..::|.      ||.|:        :.||          |..|..::....:.|..:.  
  Rat     8 SFYKQSPNIPAYNMQTCGNYGSASEVQASRYCYGGLDLSITFPPPAPSNSLHGVDMAANPRAH-- 70

  Fly    44 LEDREESGRNLDKIHRFSVDNIMEMKHDAYS----------KGKMAMELSSNFGPTGAGCGGADR 98
             .||..........|....|....:....||          :.|.:.|:......||...|.:..
  Rat    71 -PDRPACSAAAAPGHALGRDEAAPLNPGMYSQKAARPALEERAKSSGEIKEEQAQTGQPAGLSQP 134

  Fly    99 PAP-----------CSGNLPAGGGHHSRKPRRNRTTFSSAQLTALEKVFERTHYPDAFVREELAT 152
            |||           .|         |....:|:||:::..|...|||.|....|.....|.|:|.
  Rat   135 PAPPQIYPWMTKLHMS---------HETDGKRSRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAN 190

  Fly   153 KVHLSEARVQVWFQNRRAKFRRNERSVGSRTL 184
            .:.|:|.::::||||||.|::::.:......|
  Rat   191 NLCLNERQIKIWFQNRRMKWKKDSKMKSKEAL 222

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG9876NP_611756.1 Homeodomain 118..174 CDD:459649 21/55 (38%)
Hoxc5NP_001101586.1 Homeodomain 156..212 CDD:459649 21/55 (38%)

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