DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG9876 and pdx1

DIOPT Version :10

Sequence 1:NP_611756.1 Gene:CG9876 / 37668 FlyBaseID:FBgn0034821 Length:275 Species:Drosophila melanogaster
Sequence 2:NP_571518.2 Gene:pdx1 / 30721 ZFINID:ZDB-GENE-990415-122 Length:246 Species:Danio rerio


Alignment Length:248 Identity:57/248 - (22%)
Similarity:91/248 - (36%) Gaps:87/248 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 YQQQLHSL---PVGNPGNFYYGPTVSGEIYSSHQSHNLESEDKLEDREESGRNLDKIHRFSVDNI 65
            |.:|.||:   |:|....    |.:     :...|:|:.|.|.|     :|.:|           
Zfish    37 YMRQAHSVYASPLGAQDQ----PNL-----TDITSYNMSSRDDL-----AGPHL----------- 76

  Fly    66 MEMKHDAYSKGKMAMELSSNFGPTGAGCGGADR---PAP----CSGNLPAGGGH-------HSRK 116
                 ......:.:::....:|.:...||..:|   |.|    ...:..|..|.       .:.:
Zfish    77 -----HLPQTSQTSLQSLGGYGDSLDLCGDRNRYHLPFPWMKSTKSHTHAWKGQWTGPYMVEAEE 136

  Fly   117 PRRNRTTFSSAQLTALEKVFERTHYPDAFVREELATKVHLSEARVQVWFQNRRAKFR-------- 173
            .:|.||.::.|||..|||.|....|.....|.|||..:.|:|..:::||||||.|::        
Zfish   137 NKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELALTLSLTERHIKIWFQNRRMKWKKEEDKRRA 201

  Fly   174 ----------------RNERSVGSRTLLDTAPQLVPAPISNNMHKYANMPHPH 210
                            ::|..||:.||  ..|   |:|:           |||
Zfish   202 RGVDPEQDSSITSGDLKDESCVGTATL--AGP---PSPL-----------HPH 238

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG9876NP_611756.1 Homeodomain 118..174 CDD:459649 24/79 (30%)
pdx1NP_571518.2 Homeodomain 138..194 CDD:459649 24/55 (44%)

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