DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG9876 and nkx2.7

DIOPT Version :10

Sequence 1:NP_611756.1 Gene:CG9876 / 37668 FlyBaseID:FBgn0034821 Length:275 Species:Drosophila melanogaster
Sequence 2:NP_571494.1 Gene:nkx2.7 / 30694 ZFINID:ZDB-GENE-990415-179 Length:269 Species:Danio rerio


Alignment Length:147 Identity:39/147 - (26%)
Similarity:63/147 - (42%) Gaps:25/147 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   115 RKPRRNRTTFSSAQLTALEKVFERTHYPDAFVREELATKVHLSEARVQVWFQNRRAKFRRNERSV 179
            |..|:.|..||..|:..||:.|::..|..|..|:.||..:.|:..:|::||||||.|.:|..:  
Zfish   122 RLRRKPRVLFSQTQVFELERRFKQQRYLSAPERDHLALALKLTSTQVKIWFQNRRYKCKRQRQ-- 184

  Fly   180 GSRTLLDTAPQLVPAPISNNMHKYANMPHPHPQPPPPPGAYALNFGPLELRSCQNYTNCYGGFGS 244
             .::|....|:.|..|:.....|            |..||      |..:.....|.|.|..:|:
Zfish   185 -DKSLELAGPRRVAVPVLVRDGK------------PCHGA------PYNVTVSYPYNNYYNSYGN 230

  Fly   245 SGASGSGVCSFFGATNY 261
            :...    |:|....::
Zfish   231 NPYH----CNFTSVPSF 243

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG9876NP_611756.1 Homeodomain 118..174 CDD:459649 22/55 (40%)
nkx2.7NP_571494.1 COG5576 87..210 CDD:227863 30/102 (29%)
Homeodomain 125..181 CDD:459649 22/55 (40%)

Return to query results.
Submit another query.