DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG9876 and pax3a

DIOPT Version :10

Sequence 1:NP_611756.1 Gene:CG9876 / 37668 FlyBaseID:FBgn0034821 Length:275 Species:Drosophila melanogaster
Sequence 2:NP_571352.1 Gene:pax3a / 30532 ZFINID:ZDB-GENE-980526-52 Length:509 Species:Danio rerio


Alignment Length:262 Identity:82/262 - (31%)
Similarity:111/262 - (42%) Gaps:69/262 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    39 ESEDKLEDR--EESGRNLDKIHRFSVDNIMEMKHDAYSKGKMAMELSSNFGPTGAGCGGADRPAP 101
            |.:|::|.|  ||:.|..    :.|:|.|:   .|..|......::.|..|              
Zfish   170 EDDDEVEKREIEENERRA----KHSIDGIL---GDRSSHSDEGSDVDSEPG-------------- 213

  Fly   102 CSGNLPAGGGHHSRKPRRNRTTFSSAQLTALEKVFERTHYPDAFVREELATKVHLSEARVQVWFQ 166
                ||.     .||.||:||||::.||..||:.||||||||.:.|||||.:..|:||||||||.
Zfish   214 ----LPL-----KRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFS 269

  Fly   167 NRRAKFRRNERSVGSRTLLDTAPQLVP------APISNNMHKYANMPHP---------------H 210
            ||||::|   :..|:..|: ....|:|      |..|...::.|:.|:|               .
Zfish   270 NRRARWR---KQAGANQLM-AFNHLIPGGFPPSAMSSLQPYQLADSPYPPSSISQVSEQPSTVHR 330

  Fly   211 PQPPPPPGAY--ALNFGPLELRSCQNYTNCYGGFGSSGASGSGVCSFFGATNYCVAANYAKNAYP 273
            |||.||...:  .|..||........|....|..|.||.|          ..|..|..:|....|
Zfish   331 PQPLPPTSVHQSGLGSGPGAQEGSSAYCLSSGRHGFSGYS----------DGYVAAPGHANPVNP 385

  Fly   274 PL 275
            .:
Zfish   386 SI 387

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG9876NP_611756.1 Homeodomain 118..174 CDD:459649 36/55 (65%)
pax3aNP_571352.1 PAX 34..159 CDD:128645
Homeodomain 221..277 CDD:459649 37/58 (64%)
Pax7 350..394 CDD:403540 10/48 (21%)
Blue background indicates that the domain is not in the aligned region.

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