DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG9876 and hoxa11b

DIOPT Version :10

Sequence 1:NP_611756.1 Gene:CG9876 / 37668 FlyBaseID:FBgn0034821 Length:275 Species:Drosophila melanogaster
Sequence 2:NP_571222.1 Gene:hoxa11b / 30382 ZFINID:ZDB-GENE-990415-4 Length:283 Species:Danio rerio


Alignment Length:198 Identity:49/198 - (24%)
Similarity:81/198 - (40%) Gaps:39/198 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 QQQLHSLPVGNPGNFYYGPTVS---GEIYSSHQSHNLESEDKLEDREESGRN------LDKIHRF 60
            :..:|...:.|||..  |..:|   ..:|.|:.||.......:      |||      .|:....
Zfish    88 EDMVHRECLSNPGTL--GDMLSKNNSVLYHSNSSHTSNVYGSV------GRNGVLPQAFDQFFET 144

  Fly    61 SVDNIMEMKHD-----AYSKGKMAMELSSNFGPTGAGCGGADR---------PAPCSGNL--PAG 109
            :..|:.....:     |.||.....|..|:      .|.|.|.         |.|.|||.  ...
Zfish   145 AYGNVENQPTEHPVDRATSKAPPPAESGSD------SCRGTDETERCEETSSPEPSSGNNEDKFS 203

  Fly   110 GGHHSRKPRRNRTTFSSAQLTALEKVFERTHYPDAFVREELATKVHLSEARVQVWFQNRRAKFRR 174
            |..:.:|.|:.|..::..|:..||:.|..:.|.:...|.:|:..::|::.:|::||||||.|.::
Zfish   204 GSSNGQKTRKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKK 268

  Fly   175 NER 177
            ..|
Zfish   269 LNR 271

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG9876NP_611756.1 Homeodomain 118..174 CDD:459649 18/55 (33%)
hoxa11bNP_571222.1 DUF3528 26..151 CDD:432284 15/70 (21%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 150..215 16/70 (23%)
Homeodomain 212..268 CDD:459649 18/55 (33%)

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