DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG9876 and hoxd3a

DIOPT Version :10

Sequence 1:NP_611756.1 Gene:CG9876 / 37668 FlyBaseID:FBgn0034821 Length:275 Species:Drosophila melanogaster
Sequence 2:NP_571200.1 Gene:hoxd3a / 30349 ZFINID:ZDB-GENE-990415-120 Length:396 Species:Danio rerio


Alignment Length:193 Identity:55/193 - (28%)
Similarity:81/193 - (41%) Gaps:28/193 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    79 AMELSSNFGPTGAGCGGADRPAPCSGNLPAGGGHHSRKPRRNRTTFSSAQLTALEKVFERTHYPD 143
            |.:.|:|....|..|.....|.|.|              :|.||.::||||..|||.|....|..
Zfish   137 AKQKSTNCPAAGETCDDKSPPGPAS--------------KRVRTAYTSAQLVELEKEFHFNRYLC 187

  Fly   144 AFVREELATKVHLSEARVQVWFQNRRAKFRRNERSVG-SRTLLDTAPQLVPAPISNNMH------ 201
            ...|.|:|..::|:|.::::||||||.|::::::|.| ..:.|..:|...| |:|.:.|      
Zfish   188 RPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKSKGIMHSPLGHSPDRSP-PLSGSNHIGYSGQ 251

  Fly   202 --KYANMPHPHPQPP----PPPGAYALNFGPLELRSCQNYTNCYGGFGSSGASGSGVCSFFGA 258
              ...::.:..|.||    |....|.|......|..|......|.|......|..|..||..|
Zfish   252 LPNVNSLSYDAPSPPSFAKPQQNIYGLAAYTAPLGGCIPQQKRYPGTEYDHHSMQGNGSFANA 314

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG9876NP_611756.1 Homeodomain 118..174 CDD:459649 24/55 (44%)
hoxd3aNP_571200.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 18..163 8/39 (21%)
COG5576 116..237 CDD:227863 36/113 (32%)
Antp-type hexapeptide 126..131
Homeodomain 162..218 CDD:459649 24/55 (44%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 219..246 7/27 (26%)
DUF4074 333..394 CDD:463833
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 364..396
Blue background indicates that the domain is not in the aligned region.

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