Protein Alignment CG9876 and Cdx4

DIOPT Version :10

• Sequence 1: NP_611756.1
• Gene: CG9876 / 37668
• FlyBaseID: FBgn0034821
• Length: 275
• Species: Drosophila melanogaster
• Sequence 2: NP_001100412.1
• Gene: Cdx4 / 302400
• RGDID: 1561529
• Length: 288
• Species: Rattus norvegicus
• Alignment Length: 141
• Identity: 44/141 - (31%)
• Similarity: 55/141 - (39%)
• Gaps: 48/141 - (34%)

  Fly    84 SNFGPTGAGCGGADRPAPCSGNLP--------------AGG------GHHS-------------- 114
            |..|||| |.|||..    .|:||              :||      ..||
  Rat   114 STLGPTG-GAGGASN----GGSLPDAASESLVSIDSGTSGGATSPSRSRHSPYAWMRKTVQVTGK 173

  Fly   115 -RKPRRNRTTFSSAQLTALEKVFERTHYPDAFVREELATKVHLSEARVQVWFQNRRAKFRRN--- 175
             |...:.|..::..|...|||.|....|.....:.|||..:.|||.:|::||||||||.|:.
  Rat   174 TRTKEKYRVVYTDHQRLELEKEFHCNRYITIRRKSELAVNLGLSERQVKIWFQNRRAKERKMIKK 238

  Fly   176 -----ERSVGS 181
                 |.|.||
  Rat   239 KISQFENSGGS 249

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
CG9876	NP_611756.1	Homeodomain	118..174	CDD:459649	22/55 (40%)
Cdx4	NP_001100412.1	Caudal_act	13..174	CDD:461413	16/64 (25%)
		Homeodomain	179..234	CDD:459649	22/54 (41%)