DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG9876 and Shox2

DIOPT Version :10

Sequence 1:NP_611756.1 Gene:CG9876 / 37668 FlyBaseID:FBgn0034821 Length:275 Species:Drosophila melanogaster
Sequence 2:NP_037160.2 Gene:Shox2 / 25546 RGDID:3674 Length:331 Species:Rattus norvegicus


Alignment Length:208 Identity:63/208 - (30%)
Similarity:78/208 - (37%) Gaps:87/208 - (41%)


- Green bases have known domain annotations that are detailed below.


  Fly    87 GPTGAGCGGADRPAPCSGNLPAGGGHHSRKP--------------------------------RR 119
            |..|.|.||...|.   ..|..|....||:|                                ||
  Rat    81 GGAGGGAGGGRSPV---RELDMGAAERSREPGSPRLTEVSPELKDRKEDAKGMEDEGQTKIKQRR 142

  Fly   120 NRTTFSSAQLTALEKVFERTHYPDAFVREELATKVHLSEARVQVWFQNRRAKFRRNERSVGSRTL 184
            :||.|:..||..||::|:.|||||||:||||:.::.||||||||||||||||.|:.|..:....|
  Rat   143 SRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRKQENQLHKGVL 207

  Fly   185 LDTAPQLVPAPISNNMHKYAN-----MP---------------------------------HPH- 210
            :..|.|.....::    .|.|     ||                                 ||| 
  Rat   208 IGAASQFEACRVA----PYVNVGALRMPFQQDSHCNVTPLSFQVQAQLQLDSAVAHAHHHLHPHL 268

  Fly   211 ---------PQPP 214
                     |.||
  Rat   269 AAHAPYMMFPAPP 281

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG9876NP_611756.1 Homeodomain 118..174 CDD:459649 37/55 (67%)
Shox2NP_037160.2 Homeodomain 141..197 CDD:459649 37/55 (67%)
OAR 311..327 CDD:461067
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.