DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG9876 and Alx1

DIOPT Version :10

Sequence 1:NP_611756.1 Gene:CG9876 / 37668 FlyBaseID:FBgn0034821 Length:275 Species:Drosophila melanogaster
Sequence 2:NP_037053.1 Gene:Alx1 / 25401 RGDID:2273 Length:326 Species:Rattus norvegicus


Alignment Length:258 Identity:76/258 - (29%)
Similarity:108/258 - (41%) Gaps:76/258 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 PVGNPGNFYYGPTVSGEIYSSHQSHNLESEDKLEDREESGRNLDKI-------HRFSVDNIMEMK 69
            |.....:||.|  ..|.:  .|....|::| ....:..:|:.:...       |...:|.....:
  Rat    13 PPSKNSDFYMG--TGGAL--EHVMETLDNE-SFYGKATAGKCVQAFGPLPRAEHHVRLDRTSPCQ 72

  Fly    70 HDAYSKGKMAME---LSSNFGPTGAGCGGADRPAP----------------CSGNLPAGGGHHSR 115
            ..:.:.|...:|   |.:.......||... |.:|                |..|:      .|.
  Rat    73 DSSVNYGITKVEGQPLHTELNRAMDGCNNL-RMSPVKGMPEKSELDELGDKCDSNV------SSS 130

  Fly   116 KPRRNRTTFSSAQLTALEKVFERTHYPDAFVREELATKVHLSEARVQVWFQNRRAKFRRNER--- 177
            |.||:||||:|.||..|||||::|||||.:|||:||.:..|:||||||||||||||:|:.||   
  Rat   131 KKRRHRTTFTSLQLEELEKVFQKTHYPDVYVREQLALRTELTEARVQVWFQNRRAKWRKRERYGQ 195

  Fly   178 --------------SVGSRTLLDTAPQ-------------------LVPAPISNNMHKYANMP 207
                          ||..||  |:.||                   ::|...|:.|..|::.|
  Rat   196 IQQAKSHFAATYDISVLPRT--DSYPQIQNNLWAGNTSGGSVVTSCMLPRDASSCMTPYSHSP 256

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG9876NP_611756.1 Homeodomain 118..174 CDD:459649 39/55 (71%)
Alx1NP_037053.1 Homeodomain 133..189 CDD:459649 39/55 (71%)
Transactivation domain. /evidence=ECO:0000269|PubMed:12390248 192..326 13/67 (19%)
OAR 302..320 CDD:461067
OAR. /evidence=ECO:0000255|PROSITE-ProRule:PRU00138 306..319
Blue background indicates that the domain is not in the aligned region.

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