Protein Alignment CG9876 and Hoxc6

DIOPT Version :10

• Sequence 1: NP_611756.1
• Gene: CG9876 / 37668
• FlyBaseID: FBgn0034821
• Length: 275
• Species: Drosophila melanogaster
• Sequence 2: XP_063119084.1
• Gene: Hoxc6 / 252885
• RGDID: 620626
• Length: 264
• Species: Rattus norvegicus
• Alignment Length: 244
• Identity: 59/244 - (24%)
• Similarity: 94/244 - (38%)
• Gaps: 43/244 - (17%)

  Fly     4 YQQQLHSLPVGNPGNFYYGPTVSGEIYSSHQSHNLE------SEDKLEDREESGRNLDKIHRFSV 62
            |.|..: :|..:|.  |||.|..    |..|.|:.|      ......:|:.|..:|........
  Rat    23 YSQNSY-IPEHSPE--YYGRTRE----SGFQHHHQELYPPPPPRPSYPERQYSCTSLQGPGNSRA 80

  Fly    63 DNIMEMKHDAYSKGKMAME------LSSNFGPTGAGCG--GADRPAPCSGNLP------------ 107
            ....:..|....|.:...|      .|::..|....|.  ..|.|:..:...|
  Rat    81 HGPAQAGHHHPEKSQPLCEPAPLSGASASPSPAPPACSQPAPDHPSSAASKQPIVYPWMKKIHVS 145

  Fly   108 -AGGGHHSRKPRRNRTTFSSAQLTALEKVFERTHYPDAFVREELATKVHLSEARVQVWFQNRRAK 171
             ....::..:|:|:||.::..|:..|||.|....|.....|.|:|..:.|||.::::||||||.|
  Rat   146 TVNPNYNGGEPKRSRTAYTRQQVLELEKEFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMK 210

  Fly   172 FRRNERSVGSRTLLDTAPQLVPAPISNNMHKYANMP---HPHPQPPPPP 217
            ::::.|.  ..|.:.:||....||.:.:    |..|   ..|.|...||
  Rat   211 WKKDHRL--PNTKVRSAPPAGAAPSTLS----AATPGTSEDHSQSATPP 253

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
CG9876	NP_611756.1	Homeodomain	118..174	CDD:459649	22/55 (40%)
Hoxc6	XP_063119084.1	None